>tRNA
GGGGAUGU_A_GCUUAGU___GGU___AAAGCA_U_UGGAC_UUAUAAUCCG_AAG________________________G___CGUG_GGU_UCG_AA__UCCCG_U_UAUCCCC_A
.((((((....(((...............)))..(.((((........)))).)...............................(((.((...........)))).).))))))... (-19.43 =  -8.59 + -10.84)
 free energy of ensemble = -19.54 kcal/mol
 frequency of mfe structure in ensemble 0.999818;
>Vault
GGGCUGGC_UUUAGCUC_AGCGGUUACUUCGACAAUCCUAAUUUUAUUUCCCUCCACCUU________________________________________________UGGGGGUUCGAGAC_________________CCGCGGGCGCUCUCCAGCCCUUUU
(((((((......((((..((((....................................................................................................................)))))))).....))))))).... (-16.48 = -13.80 +  -2.68)
 free energy of ensemble = -16.55 kcal/mol
 frequency of mfe structure in ensemble 0.998438;
>Hammerhead_3
CAAAAGUC_UGGGCUA______AGCCCACUGAUGAGUCUCUGA________________________AAUGAGACGAAACUUUUG
..((((...((((((.......)))))).......((((................................))))....)))).. ( -9.12 =  -5.09 +  -4.03)
 free energy of ensemble =  -9.41 kcal/mol
 frequency of mfe structure in ensemble 0.994355;
>DsrA
AACACAUCAGAUUUCCUGGUGUAACGAAUU_UUCAAGUGCUUCUUGCAUAAGCAAGUUUCAUCCCGA_CCCCCCC_GGGUCGGGAUUU
...(((((((.....)))))))....................(((((....)))))...((((((((.(((.....))))))))))). (-24.38 = -22.74 +  -1.64)
 free energy of ensemble = -25.37 kcal/mol
 frequency of mfe structure in ensemble 0.725969;
>SNORD14
_____UCACAGUGAUGAUAAAAU_________GUUCCUCA__ACAUUCGCAGUUUCCGCCUAAG_GC_U_C_CCCUGCCAGGCU_________________G___GC___________AUUGCUG_UAAAUCCUUCCUU_GGAUGUCUGAGCGA_____
.....((((...(((....................................((....))........................................................................((.......))..)))...))))..... (  4.65 =   5.51 +  -0.85)
 free energy of ensemble =   3.33 kcal/mol
 frequency of mfe structure in ensemble 0.887106;
>Y_RNA
GGCUGGUCCGAGGGUAGUGG__G___UUA_______________________CAAUUAAUUAC______________AG_UAGUUACACUUUUCUUUGUAUUUUCCC_CC_U_CCCACUGCUGCACUUGACUAGCC_____UUUU
((((((((......((((((..............................................................................................))))))........))))))))......... ( -9.84 =  -8.19 +  -1.65)
 free energy of ensemble = -10.09 kcal/mol
 frequency of mfe structure in ensemble 0.996184;
>Spot_42
AGUUAUCGGCGUAGGGUA__CAGAGGU_AAGAUGUUCUAUCUUUCAGACCUUU___UAUUUC___AC__GUAAUUGGAU______UAGGCUGAU____UUAGCCGCCCCAGUCA_GU_U_U___UGACUGGGGCGUUUUUUA
........((((.(((((...((((((.((((((...))))))....))))))...)))))....))..))................(((((.......)))))((((((((((..........))))))))))........ (-31.84 = -29.01 +  -2.83)
 free energy of ensemble = -32.87 kcal/mol
 frequency of mfe structure in ensemble 0.91561;
>let-7
CCAGGUUGAGGUAGUAGGUUGUA_UAGUUUU_AGGGU________UUUU_GCCC___AUUAGGAGAUAACUAUACAACCUACUGCCUU_CCCUGA
..(((..(((.(((..(((((((.(((((......................................))))))))))))..))).)))..))).. (-15.40 = -12.72 +  -2.68)
 free energy of ensemble = -15.56 kcal/mol
 frequency of mfe structure in ensemble 0.995895;
>SECIS_1
G_UUUCAUU___AUGACGGCCUGUGCU_UAAA__CCUCC____GAG__C________GGGUCA_G_G_UCUGAU___CUUG_______GAGAC
...(((...........(((((((((........(((......)))............))))).).).))..................))).. (-11.59 =  -4.71 +  -6.89)
 free energy of ensemble = -12.04 kcal/mol
 frequency of mfe structure in ensemble 0.988119;
>Histone3
CCAAAGGCUCUUUUAAGAGCCACC_CACAUUUUCAAAAAAAUGUUGU
.....((((((....)))))).......................... ( -3.55 =  -1.73 +  -1.82)
 free energy of ensemble =  -3.58 kcal/mol
 frequency of mfe structure in ensemble 0.99891;
>MicF
CGCUAUCAUCAUUAACUUUAUUUAUUACCGUCAUUCACU__UCUGAAUGUCUGUUUACCCCUAUUUCAACCGGAUGCUUCGCAUCCGGUUUUUUUU
...((.......))............((.(.((((((......)))))).).)).............((((((((((...))))))))))...... ( -6.96 =  -6.53 +  -0.44)
 free energy of ensemble =  -9.50 kcal/mol
 frequency of mfe structure in ensemble 0.357692;
>RprA
ACGGAUAUA__AAUCA_ACACAUUGAUUUA_UAAUUAUGGAAA__UCC_CCUGAGCG__AAACAAC_GAAUUGCUGUGUGUAGUCUUUGCCCGUCAC__CUAAGAUGGGCUUUUUUUUUU
........................................................................................(((((((........))))))).......... ( -5.00 =  -4.09 +  -0.91)
 free energy of ensemble =  -6.97 kcal/mol
 frequency of mfe structure in ensemble 0.782233;
>OxyS
GAAACGGAGCGGCACCUCUUUUAACCCUUGAAGUCACUGCCCGUUUCGAGAGUUUCUC___AACUCGAA_UAACUAAAGCCAACGUGAACUUUUGCGGAUCUCCAGGAUCCGCU
(((((((.((((.....((((........))))...)))))))))))..(((((.......)))))............................((((((((...)))))))). (-23.86 = -24.58 +   0.72)
 free energy of ensemble = -26.23 kcal/mol
 frequency of mfe structure in ensemble 0.46412;
>IRE_I
CG_G_UUUCUUGCUUCAACAGUGUUUGAACGGAAACCG
.........(((..((((......)))).)))...... (  3.52 =   4.29 +  -0.76)
 free energy of ensemble =   2.57 kcal/mol
 frequency of mfe structure in ensemble 0.974996;
>PrfA
UGUAAAAAACAUCAUUUAGCGUGACUUUCUUUCAACAGCUAACAAUUGUUGUUACUGCCUAAUG___UUUUUAGGGUA_UUUUAAAAAAGGGCGAUAAAAAACGAUUGGGGGAUGA_GACAUGAACGCUCAAGCA
(((.....)))(..((.(((((...((((.........((..((((((((.(((..((((.............................))))..))).)).))))))..))..)).)).....))))).))..) (-10.59 = -10.29 +  -0.30)
 free energy of ensemble = -13.21 kcal/mol
 frequency of mfe structure in ensemble 0.679826;
>DicF
UUCUGGUGACAUUUGGCGGUAUCAGUUUUACUCCGUG___ACUGCUCUGCCGCCC
..............(((((((.((((..............))))...))))))). ( -6.86 =  -6.90 +   0.04)
 free energy of ensemble =  -7.89 kcal/mol
 frequency of mfe structure in ensemble 0.715471;
>Entero_OriR
AAGUGGUUGGACUCCUUCUAAA__UUAGAG_ACAAUUUGAA____AUAAUUUGAA_UUGGCUUAACCCUACUGCACUAACCGAACUAGAUAACGGUGCAGUAGGGGUAAAUUCUCCGCAUUCGGUGCGG__________
......(((((.....)))))............................................(((((((((((..................)))))))))))..........(((((...)))))........... (-18.21 = -16.50 +  -1.71)
 free energy of ensemble = -20.01 kcal/mol
 frequency of mfe structure in ensemble 0.952433;
>CopA
AUAGCUGAAUUGUUGGCUAUACGGUUU__AAGUGGGCCCCGGUAAUCUU_UUCUUAGUCGCCAAAC_UUGAAGAAGAUUAUCGGGGUUUUUGCUU
((((((........))))))(.(((.........(((((((.(((((((.......((......)).......))))))).)))))))...)))) (-18.19 = -16.07 +  -2.11)
 free energy of ensemble = -18.92 kcal/mol
 frequency of mfe structure in ensemble 0.968399;
>Plasmid_R1162
CGGCGCAGGGCGGGG_AU_GUGACCCCGCCAGCGCCUAACCACCAACUGCCUGCAAAGGAGGCAAGC_AAUGGCUAC
.(((((..(((((((........))))))).)))))...(((.....(((((.......)))))......))).... (-26.07 = -25.21 +  -0.86)
 free energy of ensemble = -26.69 kcal/mol
 frequency of mfe structure in ensemble 0.881771;
>snoR30
GGCUGUUGCGAUGAGGAUAUUAUGCUCCCUCUUCUGAAGGCAUUGAGGACGCUCGCUGGCAGAAUCGAACCAAUUAUUAAAGCCACCACUGAGUAA
....(((.((((((((...........)))).((((..(((...(((....))))))..)))))))))))...(((((..((......)).))))) ( -8.44 =  -9.63 +   1.19)
 free energy of ensemble = -10.20 kcal/mol
 frequency of mfe structure in ensemble 0.620358;
>mir-2
CAACUCGUCAAAG_UGG_UU_G_UGAAA__UGUU___G_UAUUUUUU_____AAAAUCAUAUCACAGCCAGCUUUGAUGAGCUUGG
.....((.(((((..........................................................))))).))....... (  6.61 =   7.03 +  -0.42)
 free energy of ensemble =   5.77 kcal/mol
 frequency of mfe structure in ensemble 0.975894;
>Entero_CRE
GAUGAGCAAUUACAUACAGUUCAAGUCCAAAUGCCGUAUUGAACCUGUAUGUUUGCUCCUA
...(((......((.((.((((((..............))))))..)).))....)))... (  3.11 =   3.41 +  -0.29)
 free energy of ensemble =   1.99 kcal/mol
 frequency of mfe structure in ensemble 0.967879;
>SNORD36
UUGCA_AUGAUGU______AUGAAUUUCUUCACCUGAAUUC____AACCUUGAAGU__UCAAA_____ACGAGCUUUUUAACCCUGA_GCAAU
............................................................................................. (  6.69 =   6.69 +   0.00)
 free energy of ensemble =   6.47 kcal/mol
 frequency of mfe structure in ensemble 0.99404;
>mir-17
CCUUAGUAGUGCCAAAGUGCUUACAGUGCAGGUAG_UGUUUUGUG_A_U_CUACUGCAGUGUGGGCACUUGUAGCACUAUCGUGG
.....(.((.((..((((((((.((.(((.(.(((...............)))).))).)).))))))))...)).)).)..... (-10.68 =  -7.58 +  -3.10)
 free energy of ensemble = -11.41 kcal/mol
 frequency of mfe structure in ensemble 0.978554;
>lin-4
GCCUAGUCCCUGAGACCCU__AACUUGUGAGGUUU_UAUAGUAGCUUCACAAGU_AGGCUCUC_GGGAACUAGG
..(((..(((.((((.(((...((.(((((................))))).)).))).)))).)))...))). (-11.88 = -10.08 +  -1.80)
 free energy of ensemble = -12.53 kcal/mol
 frequency of mfe structure in ensemble 0.915582;
>mir-7
GGGCU_A_GUGCCGUCUGGAAGACUAGUGAUUUUGUUGUUGU____GU_UAUUGCUAA_____UAACAACA_AAUCACAGUCUGCCU_CACGGCGCC_G_GCCA
..(((.(.((.((((..((.........((((.(((((((........................))))))).))))........))...)))).))).).)).. (-15.09 = -11.24 +  -3.85)
 free energy of ensemble = -16.63 kcal/mol
 frequency of mfe structure in ensemble 0.957111;
>SNORD25
_GUGACAGUGAUGAGC_CC__UAACAGACCUGUAAUGAUUCUUGCGGAUAUGAUCGCUUGAU_CAAAGAACAUCUAAGGGACUGAGUUGUC
........................................................................................... (  6.78 =   6.78 +   0.00)
 free energy of ensemble =   6.31 kcal/mol
 frequency of mfe structure in ensemble 0.938383;
>SNORD96
GAACC_AGUGAUGACAA_CCGAC_AUUAAAAA_CACCAUCUUUCGGGACUGAUUGAG_____________GACAUG_UG_UA_UUCUGCA_AUUCUGA__GGCUU
..(((...............................................................................................))).. (  6.44 =   7.42 +  -0.99)
 free energy of ensemble =   5.92 kcal/mol
 frequency of mfe structure in ensemble 0.910373;
>SNORA71
CCCUGCAUUC_GAAAGUGAUCAUGGGCU___GCC_UGUGCCCUGGUCAUUGAUAGUGCAGGGAGAGGAAUUGCUGAAAGCAUUU__CCCCGUGUUUGGAGGGUCCACUCCUGU_CCCUUCCAAACCCUGGAGCU_UUCCCACA
.(((((((...........(((.(((.............)))))).........)))))))............(((((((............(((((..(((............)))...)))))......))).)))).... (-14.84 = -12.82 +  -2.02)
 free energy of ensemble = -16.21 kcal/mol
 frequency of mfe structure in ensemble 0.946221;
>RyhB
GAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUAUUU__AGCCAGC___UUGG_UGCUGGCUUUUUUUU
......((......((.......)).....)).........(((((((.........)))))))....... ( -6.08 =  -3.83 +  -2.25)
 free energy of ensemble =  -7.42 kcal/mol
 frequency of mfe structure in ensemble 0.919949;
>HgcE
GGCGCGCAAUGAACG_AGGUGACGUCGCCGGGCGGACAGGGCCCGGUCUCCGGGGCCGCCUGAGGGUGCCGAGAA_GGCGGUCAAUGAAGGCGGGCGGAUAAGCCGGGCCC__AAACCACUUUAAUUCUAA__UU
(((((((...........)))....))))((..(((..(((((((((.((((...((((((..(..((((......)))).....)..)))))).))))...)))))))))...............)))....)) (-39.20 = -39.08 +  -0.13)
 free energy of ensemble = -41.07 kcal/mol
 frequency of mfe structure in ensemble 0.467981;
>SscA
AGGCCAAAUGAGGCCCCCUCAACUAA_GGCGGGUUUCCCGCCGGAGGGGGCCGAUGUCCGAAAGCUUUAAAAAGUAAGCUCAAAAGUAGGGUUAGGC
...........((((((((((......((((((...))))))))))))))))............................................. (-24.95 = -22.67 +  -2.28)
 free energy of ensemble = -27.15 kcal/mol
 frequency of mfe structure in ensemble 0.490615;
>snoR9
GGGCCCGGUU_CCCGCCCUCUCCGGGGAAUCGUGAACCGGGGGUUCCGACCGGGCCCACA__GGGGGAUGAUGACCUUUUGCUUUGCUGAACACAUGAUGACCACGCCCUUCGCUGAC_CUAAAUAUUUGAC
((((((((((....((((...((((...........))))))))...)))))))))).((........))................................((.((.....))))................ (-25.60 = -24.40 +  -1.20)
 free energy of ensemble = -28.90 kcal/mol
 frequency of mfe structure in ensemble 0.342741;
>U7
_AAGUG_UUACAGCUCUUUUAGAAUUUGUCUAGCA_GGUUU_UCU__GGU_UUUU_ACC__GGA_AA__GCCCCC
....................................(((((.(((..(((......)))..))).))..)))... ( -9.27 =  -6.10 +  -3.16)
 free energy of ensemble =  -9.34 kcal/mol
 frequency of mfe structure in ensemble 0.99759;
>SNORD15
CUUCAGUGAUGAUACGAUG_ACGAGUCUGAAUGGGC_______ACUCCUUGUCCAGGG_UCCCUGUCAGUGCCACGUUCUG__UGGUGCUG____UUCU__AGUUCCUCUG_CAGAAGAGUCCU_CUUAACUGGAUGACAUAGAGGCAUUUGUCUGAGA_AGG
((((...........(((......))).......................................(((((.(((.....)..)).)))))...................................................))))(.(((......)).).) ( -2.03 =  -1.34 +  -0.69)
 free energy of ensemble =  -3.82 kcal/mol
 frequency of mfe structure in ensemble 0.76829;
>SNORD21
GCUAUAUGAUGAUACCCCAAUGUCUGACCACUCAGUAGUAGGUCCAUUGUGUGUAUAUGAUGGAAU_CAUUGUUUCAAGACGGGACUGA_UGGCAGC
..................................((....(((((..(((.(....((((((.....))))))....).)))))))).....))... (  3.66 =   2.02 +   1.64)
 free energy of ensemble =   0.84 kcal/mol
 frequency of mfe structure in ensemble 0.399395;
>SNORD24
UGCAA__AUG_AUGUAAA_AAAAUAUUUGCU_AUCUUAA_UGAUGGU_____________GAUGACA_AUUUAA__ACCACCAAGAUC___GCUGA_UGCA
..................................................................................................... (  6.72 =   6.72 +   0.00)
 free energy of ensemble =   6.59 kcal/mol
 frequency of mfe structure in ensemble 0.984514;
>SNORD29
_UUGCUAUGAUGAAAC_____UAACUAGCUCACUAUGA_____CUAAUCGUGAAAAG______AUAUGAACU___________CCUGAGCAUC
...........................(((((.....................................................)))))... (  4.63 =   4.43 +   0.20)
 free energy of ensemble =   4.30 kcal/mol
 frequency of mfe structure in ensemble 0.947559;
>SNORD73
AAUGAAUGAUGACAAAAUGUUUCGGUCCCAAAUGAUGCC____CACUGAUUA_________AACCGUUACAUUUUUU_CUGACAUU
...................................................................................... (  6.64 =   6.64 +   0.00)
 free energy of ensemble =   6.09 kcal/mol
 frequency of mfe structure in ensemble 0.965022;
>SNORA75
AUCUUCUCAUUGAGCUCCUUUCUGUCAAU____CAGUGGCAGUUUAUGGAUUCGCACGAGAAGAAGAGAGAAU__UCAC_AGAACUAGCACG___UUA__CUUC_UG_U_UUUACAGAAG________UACAUUUGGCUGU___GUGUGAGACAUUC
..((((((..((((.(((...((((((.........)))))).....)))))))...))))))..(((....(..((((.(.......((..........((((.((.(....)))))))..............)).........))))))...))) (-15.89 = -16.77 +   0.88)
 free energy of ensemble = -18.18 kcal/mol
 frequency of mfe structure in ensemble 0.538196;
>mir-156
GUGACAGAAGAGAGUGAGCACACAUGGUGGCU__CUUGC_______AUGUGCUAUGCCUU___UGCUUGAA_GCUAUGCGUGCUCACU_CUCUUUCUGUCAC
..(((((((((((((((((((.(((..................................................))).))))))))).)))).)))))).. (-25.59 = -24.65 +  -0.94)
 free energy of ensemble = -25.71 kcal/mol
 frequency of mfe structure in ensemble 0.980425;
>mir-29
AUGA__CUGAUUUCAUUUGGUG_UUCAGAGU___CAAUAUAUUUUUCUAGCACCAUUUGAAAUCGG__UUAU
..((.(((((((((...(((((.((.((((..............)))))))))))...))))))))).)).. (-15.99 = -15.14 +  -0.85)
 free energy of ensemble = -16.56 kcal/mol
 frequency of mfe structure in ensemble 0.91255;
>mir-181
CUUCAGGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUU__UGAA_AA_____AAACCAUCGACCGUUGACUGUACCCUGAGG
....((.(.(((.((((((..(((((((.((((....................))))))))))))))))).))).).)).... (-14.73 = -14.14 +  -0.59)
 free energy of ensemble = -15.18 kcal/mol
 frequency of mfe structure in ensemble 0.962605;
>SraB
UAGGCAUAUUUUUUUCCAUCAGAUAUAGCGUAUUGAUGAUAGCCAUUUUAAACUAUGCGCUUCGUUUUGCAGGCUGGUCAUACUUACCAGCACUGAACGAAAAUAAGGCUGUAACCCGCAAUGUGUGCGAAUUAUUGGCAAAAGGCAACCGCAGGCUGCCUUUUUCUUU
((.((((((((.........)))))).)).))..((((.....)))).............(((((((.....(((((((.....)))))))...)))))))......((.((((..((((.....))))..))))..))((((((((.((...)).))))))))..... (-28.42 = -28.26 +  -0.16)
 free energy of ensemble = -32.97 kcal/mol
 frequency of mfe structure in ensemble 0.228545;
>MicA
GAAAGACGCGCA___UUUGUUAUCA_____UCAUCCCUAUUUU____CAG_AGA_UG_UUU__A____UUU_GGCCACA__GU_AA______UGUGGCC__UUUU
........................................................................(((((((.............)))))))...... ( -4.28 =  -4.10 +  -0.18)
 free energy of ensemble =  -4.39 kcal/mol
 frequency of mfe structure in ensemble 0.989956;
>OmrA-B
CCCAGAGGUAUUGAUUGGUG__A__UUA_UCGGCACG________CUCUU_CGU_GCUCAA_________UUCACUUGCACCAACCUGCGCG__G__AUGCGCAGGUUUUUUUU
((....)).......................((((((..............))).)))........................((((((((((......))))))))))...... (-16.86 = -12.78 +  -4.08)
 free energy of ensemble = -18.54 kcal/mol
 frequency of mfe structure in ensemble 0.88793;
>ArcZ
GUGCGGCCUGAAA_A_CAGGGCUGUGCCC_UUUGAAA_UCAUCAUAAUAAU_UAC___GGCGCAGCCACGAUUUCCCUGGUGUUGGCGCAGUA_UUCGCGCACCCCGGUCUAGCC
(...................((((((((..............................))))))))............(((((..(((........)))))))).)(((...))) (-15.22 = -14.80 +  -0.42)
 free energy of ensemble = -16.90 kcal/mol
 frequency of mfe structure in ensemble 0.73816;
>SNORD28
GUCAGAUGAUUUG_AAUUGAUAAG________CUGAUG_CUCUGUGAGGU__AUGACAGUUAAUAGCAUGUUAGAGUUCUGAUGGCA
....................................................................................... (  6.71 =   6.71 +   0.00)
 free energy of ensemble =   6.07 kcal/mol
 frequency of mfe structure in ensemble 0.950001;
>SNORD27
ACUCAAUGAUG_AACAC__AAA_AU_GACAAGCAUAUGGCUGAACUU__UAAAGUG_A_U__GUCAUCUUACUA__CUGAGA_A_
..................................................................................... (  6.66 =   6.66 +   0.00)
 free energy of ensemble =   5.34 kcal/mol
 frequency of mfe structure in ensemble 0.765312;
>SNORD26
CUACGGGGAUGAUUUUAA_AACUGAACUCUCUCUUUCUGAUGGAUUAGUGGAGAAAACAAAAA__AUA_UCUGAGUAGC
.........................(((((((((..(((......))).)))))..................))))... (  0.98 =   1.16 +  -0.18)
 free energy of ensemble =   0.40 kcal/mol
 frequency of mfe structure in ensemble 0.94579;
>SNORD30
AUAUAUGAUGACUUA_____CAUGGAAUCUCGUUCGGCUGAUGACUU_GCUGUUGAGACUCGGAAAUCUGAUUUUC
........................((.(((((..((((..........)))).))))).))............... ( -0.23 =  -0.40 +   0.18)
 free energy of ensemble =  -1.42 kcal/mol
 frequency of mfe structure in ensemble 0.907829;
>SNORD31
CUCACCAG_UGAUGAGUUGAAU__ACCGCCCCAGUCUGAUCAC__UGUGACUGAAA_GGUAU_UUUCUGAGCUGUG
............................................................................ (  6.61 =   6.61 +   0.00)
 free energy of ensemble =   6.44 kcal/mol
 frequency of mfe structure in ensemble 0.989628;
>SNORA62
_GUGCACACUGUUAGAGCUUGG_AGUUGAG_GCCAGUCUCUGGCCGAUGAACUCCCAAGUGUAGGAAGUGUGCUACAUGAA______UGGCAGGAU_UUUCGCUAACACCACAAGGG_CUC___UGGCCCAAUGAGUGGAGUUUGAUAGUAAUUCUUGCCACAAGU
...(((((((......(((((..((....(.((((.....)))))......))..)))))......)))))))...............(((((........((((.((((((..((((........)))).....))))....)).)))).....)))))...... (-28.02 = -24.96 +  -3.07)
 free energy of ensemble = -30.09 kcal/mol
 frequency of mfe structure in ensemble 0.830335;
>SNORA63
AAGCAGGAUUAA_ACUACAAUAUAGCUGCUCAGUGCUGUGUUGUCGUUCCCCCUGCUUAAAAUAAA_UUGUUU_CUUAACUAUACCUGUCUGCUAUCUUCCUGUAG__CAGCCAGGGACGCUUGGUCUCAUACAU
..(((((.........((((((((((........)))))))))).......)))))............................((((.(((((..........))..))).))))(((.....)))........ (-23.23 = -22.40 +  -0.83)
 free energy of ensemble = -24.03 kcal/mol
 frequency of mfe structure in ensemble 0.85005;
>SNORD18
UGGAAAUGAUGAGCU_CCACUUCAU_GGUCCGUGUUUCUGA___________AACUCA_UGAUAUUAGUG_GAA_________________GUUCUGAUUUA
...................................................................................................... (  6.69 =   6.69 +   0.00)
 free energy of ensemble =   6.63 kcal/mol
 frequency of mfe structure in ensemble 0.99416;
>HDV_ribozyme
UUGGCCGGCAUGGGC_CCA________GCCUCCUCGCUGGCGCCGGCUGGGCAACAUUCCGA__GGGGA_CCG__U__GCC_C____UC__GG_AAUGGCGAA___UGGGACCCA
.((((((((..................(((........))))))))))).....(((((((...(((............)).).....)..)).))))................. (-21.61 = -17.86 +  -3.75)
 free energy of ensemble = -22.16 kcal/mol
 frequency of mfe structure in ensemble 0.973654;
>snoPyro_CD
GGGGAUGAUGAGCCUU_GCCCCAC_CUGAGC____GGUGAUGAGGACUCCGGUUAGCUGACCC
............................................................... (  6.42 =   6.42 +   0.00)
 free energy of ensemble =   6.42 kcal/mol
 frequency of mfe structure in ensemble 0.999627;
>snoR71
AAGCCAUGAUGAGGGCAUUGGUUGGUGUAACCCUUGAAACGCUCCCAUGCUUCACAGAAGCUUUCACCAGUCUUCUGUGAAAAACCAGAAA_UCUCAUUUCUGAGUCU
.......(((((((..............................................................................)))))))......... (  5.02 =   4.97 +   0.05)
 free energy of ensemble =   2.19 kcal/mol
 frequency of mfe structure in ensemble 0.832262;
>SNORD22
UCCCAGUGAAGAAA_C_AUUCA_CAUGUCUUACCUCCUGUCCUAGUCCCAGAGCCUGUAAA_GGU_GAACCC_ACUGGG_GCUGGCUGGGG_GAGAA_GA_G_GA_______AAAUUUGUUCC_AGAAGGAA_CUGUCU_GA_GGGAU
.(((.............................(((..(.((.((((.(((.......................))).).))))))..))).....................................(((.....)))....))).. ( -2.02 =  -0.65 +  -1.37)
 free energy of ensemble =  -3.95 kcal/mol
 frequency of mfe structure in ensemble 0.93812;
>SraC_RyeA
AAUUAAAAAGAGACCGAAUACGAUUCCUG_UAUUCGGUCCAGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAU____GCAGGCUUAUU_C_GCCUUACUCUUUAAGAAUAGAUGACGA_CGCCAGUUUUUCCAGUUU
((.........(((((((((..........))))))))).......(((((((((....)))))))))..(((((...)))))..........((((((........))).)))...))(((....((.(((.........))).))...))) (-28.38 = -28.08 +  -0.29)
 free energy of ensemble = -30.39 kcal/mol
 frequency of mfe structure in ensemble 0.777965;
>mir-1
UCUUGGG_GUACAUACUUCUU_UAUAUGCCCAUA_UG_AA___CUUAC_AAAGC_UAUGGAAUGUAAAGAAGUAUGUAGUUUAGGU
......(.(.(((((((((....((((.((.(((.....................))))).))))...))))))))).))...... ( -6.46 =  -4.71 +  -1.75)
 free energy of ensemble =  -7.77 kcal/mol
 frequency of mfe structure in ensemble 0.968376;
>mir-10
UGGCAUAAACCC_GUAGAUCCGAACUU_GUGGUAUAAU_______GUCCGCACAAGCUCGUUUCUAUGGGUAUGUGUCGG
...(((........((((..(((.(((.(((...................)))))).)))..)))).......))).... ( -5.32 =  -3.73 +  -1.58)
 free energy of ensemble =  -5.99 kcal/mol
 frequency of mfe structure in ensemble 0.970044;
>SNORD115
GGGUCAAUGAUGAGAACCUUAUAUUGUCCUGAAGAGAGGUGAUGACUUAAAAAU__CAUGCUCAAUAGGAUUACGCUGAGGCCC
(((........................)))(..........((((........)..))).((((...(.....)..))))...) (  4.33 =   4.48 +  -0.15)
 free energy of ensemble =   2.39 kcal/mol
 frequency of mfe structure in ensemble 0.905953;
>RNAI
CGUAUUUGGUGGCUGCGCUCUUCUACAGCCAG_UUACCACGGUUCAAAAAUUUGCCAGC_UUAGUGAACCUUCGAAAAA_CCACCU___GCCAGGGUGGUUUUUUCGU
.......((((((((.(((.......)))))).)))))..(((((((.((..........)).)))))))..(((((((.((((((.......)))))).))))))). (-29.10 = -27.45 +  -1.65)
 free energy of ensemble = -30.05 kcal/mol
 frequency of mfe structure in ensemble 0.856866;
>FinP
GAUACAUAGGAACCUCCUCA__AAGGAUUCUAUGGACAGUCGAUGCAGGGAGG_GACAA_CUCCCUGCAUCGGCGAUUUU
....(((((((.(((........))).)))))))....((((((((((((((........))))))))))))))...... (-30.61 = -30.50 +  -0.11)
 free energy of ensemble = -31.13 kcal/mol
 frequency of mfe structure in ensemble 0.869516;
>SNORD116
GGAUCGA_UGAUGACUCC____________CACA_UAUACAUUCCUU_GGAAA_GCUGAA_CAAAAUGAGUGAAA___ACUCUA__UACCGUCAUU_CUCAUCG__AACUGAGGU_CC
(((((....)))...........................(((((.((.(............)))...)))))....................................))(......) (  5.13 =   5.10 +   0.03)
 free energy of ensemble =   2.99 kcal/mol
 frequency of mfe structure in ensemble 0.930068;
>Vimentin3
UUCGUAUCUUAAAG_____________AAA_CAGCUUUCAAGUGCCUU_U__CUGCAGU__UUUUCA__GGAGCGCAAGAUAGAUA
....((((((.......................(((((....(((.........)))............)))))..)))))).... (  1.90 =   2.55 +  -0.66)
 free energy of ensemble =   1.09 kcal/mol
 frequency of mfe structure in ensemble 0.933694;
>RybB
ACUGCUUUUCUUUGAUGUCCCCAUUUUGAGGA_GCCCAUUAGUCCCGCC_UU_UUAGGUUCAAGACU_AUCGGGU_UUUUUAUU
.............................(((.(((((((((((..(((.(....))))....)))).))))))).)))..... (-17.39 = -14.28 +  -3.11)
 free energy of ensemble = -18.91 kcal/mol
 frequency of mfe structure in ensemble 0.733561;
>RyeB
AGGC____A_UA_A__GCCU_GCAUUAA_UGCCAACUUUUAGCGCACGGCUCUCUCCCAAGAGCCAU_UUCCCUAGACCGAAU__A_CA___GGAAUCGUAUUCGGUCUUUUUUU
.((..............))............................((((((......)))))).........(((((((((..(.(..........)))))))))))...... (-17.54 = -14.97 +  -2.57)
 free energy of ensemble = -18.22 kcal/mol
 frequency of mfe structure in ensemble 0.93702;
>CyaR_RyeE
UCGCUGAAAAACAUAACCCAUA_AAUGC_____U____AGCUGUACCAGGAACCACCUCCUUGGCCUGCGUAAUCUCCCUUACGCUGGCUUAUUU
..........................((.....(....)))......((((......)))).(((((((((((......)))))))))))..... (-15.24 = -12.64 +  -2.60)
 free energy of ensemble = -16.25 kcal/mol
 frequency of mfe structure in ensemble 0.908451;
>SIB_RNA
UUGACACUGUUGUUUUUUUGACCUAAUUUC_AG_GAGUAAGGGUAA__GGG__AGGAUUUCUCCC_CCCU_____CUGA___UUGUCU__UAGUAAGCUGGGAAACUUAUCACUAACAGCACAACCAGUAUGAUGACUAGCUUCAUCAU_AACCCUU_UCCUUAUU
...............................((.((..((((((.....((..((((....)))).)).............................................................((((((........))))))..)))))).)))).... (-14.31 = -13.71 +  -0.60)
 free energy of ensemble = -15.26 kcal/mol
 frequency of mfe structure in ensemble 0.913122;
>S15
UGGGAUGGCUGAAUU_____AGAGAUCGGCGACCGUUUUU______UUCUUAAUUUU_UU_________GGAGUUAU___AAAAUGUCUCUAAGUGCUGAAGCAAAAGCAAAAAUCGUUGCUGAAUUCGGUCGUGAUGCA
......((((((.............))))))............................................................................................................. (  2.24 =   3.25 +  -1.01)
 free energy of ensemble =   1.91 kcal/mol
 frequency of mfe structure in ensemble 0.993172;
>C0465
GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
(............((....))..............)((((((....(((((((((.......))))))))).)))))) (-10.38 = -10.63 +   0.25)
 free energy of ensemble = -11.96 kcal/mol
 frequency of mfe structure in ensemble 0.724536;
>rydB
G_CCCC_UUCAAGAGCUAAGCC______AAUGUGAGUGCCGGAGAUAAGCGCCGGGUGGGGCAAAAAAC
..((((........(((.................))).((((.(.....).))))..))))........ ( -4.02 =  -3.77 +  -0.24)
 free energy of ensemble =  -4.91 kcal/mol
 frequency of mfe structure in ensemble 0.81291;
>C0299
GCCACGUGAGCACAGGAUAAGAGAACGAAAAAUCAGCAGUCUAUGCAGCGACAAAUAUUGAUAGCCUGAAUCAGUAUUG
....(((..(((.(((....((..........)).....))).))).)))...(((((((((.......))))))))). ( -5.66 =  -5.90 +   0.24)
 free energy of ensemble =  -6.83 kcal/mol
 frequency of mfe structure in ensemble 0.68344;
>MicC
CGUGUUAUAUGCCUUUAUUGUCAC___AGAUUUUUUUUGUUGUUGGGCCAUUGC___GUUAUCAU_UAAUUUUCCAGCAAAUAAAUUGACAAGCCCGAAC_AGUU____GUUCGGGCUUUUUUUUUGGA_UCCA
...((.(((.........))).))................(((((.............................)))))...........((((((((((.........))))))))))............... (-11.33 = -10.41 +  -0.92)
 free energy of ensemble = -13.31 kcal/mol
 frequency of mfe structure in ensemble 0.670037;
>GadY
CUUACUGAGAGCACAAAGUUUCCCGUGCCAACAGGGAGUGUUAUAACGGUUUAUUAGUCUGGAGACGGCAGACUAUCCUCUUCCCGGUCCCCUAUGCCGGGUUUUUUUUAUGUC
(((...))).(((.((((...((((.((.....((((.((.......((.....(((((((.......))))))).......)))).))))....))))))....)))).))). (-21.56 = -21.96 +   0.40)
 free energy of ensemble = -23.42 kcal/mol
 frequency of mfe structure in ensemble 0.546968;
>t44
CUUAAU_____UUGUGUAA__AAAACACACACGU_AUCGACA__CAU_AC_UCCGGGGUGCCCUUA__________________________________AAGGGGU_CGGU__GUAUG_GGAUACGUGGAGGC_CUAAC
.............................(((((.(((..(...(((.(..(((.....(((((......................................)))))..)))...)))).)))))))))........... (-14.26 =  -9.59 +  -4.67)
 free energy of ensemble = -15.55 kcal/mol
 frequency of mfe structure in ensemble 0.973512;
>mir-103
UUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUGGCAUGCAGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGCACAG
.....(((((((((.((.((((((((((.((((............)))))))))))))).))))))..)))))..... (-20.23 = -19.47 +  -0.76)
 free energy of ensemble = -21.75 kcal/mol
 frequency of mfe structure in ensemble 0.915954;
>mir-192
ACUAAGAAAUGGUGUACAGGAAAAUGACCUAUGAAUUGACAGACAGUGUGGCUAAG_____UCUGUCUGUCAUUUCUGUAGGCCA_AUAUUCUGUAUGCCUCUGCUACUUC
...............(((......((.((((((...((.(((((((................))))))).))....)))))).)).......)))................ ( -7.88 =  -7.16 +  -0.72)
 free energy of ensemble =  -9.20 kcal/mol
 frequency of mfe structure in ensemble 0.949093;
>mir-30
UGUAAACAUCCUCGACUGGAAGCUGUAAAACAU____GGAUGAGCUUUCAGUCGGAUGUUUGCU
..((((((.........(((((((..................))))))).......)))))).. ( -4.82 =  -3.15 +  -1.67)
 free energy of ensemble =  -5.83 kcal/mol
 frequency of mfe structure in ensemble 0.967184;
>snoR24
GCAGCUGUGAUGAGAAA__UAACACGUAAGAAGGCCUAACCCAUCAAGGGG___UUCUUCAAUGAAAUACAUUUGUUACGCUUGGCUUCUGAGCUAA
...((.((((((((..........(((..(((((.....................))))).))).......))))))))))...(((....)))... ( -0.38 =  -0.27 +  -0.12)
 free energy of ensemble =  -2.34 kcal/mol
 frequency of mfe structure in ensemble 0.767422;
>SNORD33
GGG_GUCA_GUGAUGAGG___CCUUCU_CCA___UCUUACGUUC_GAG_______U__UUCACG__ACCAUGAGAUCAC____CCACAUGCACUACC_AUCUGAGACC_UC
..(.(((....((......................................................................................))...))))... (  3.50 =   5.16 +  -1.67)
 free energy of ensemble =   2.95 kcal/mol
 frequency of mfe structure in ensemble 0.987783;
>snoZ196
UGCAAUCUAUGAUGC_AAAUAA_______UCCCAUUUA___CUGAAU_UACAGUGA__UUAUUCCAAUCA___AAAUCACCAUCUUUCG__GCUGAGA_UUGCA
........................................................................................................ (  6.82 =   6.82 +   0.00)
 free energy of ensemble =   5.87 kcal/mol
 frequency of mfe structure in ensemble 0.932763;
>snoZ223
GUUUGGCAAUGAUGAUACAAACUUUCAGCUUACCAUGCCAGUUCUGCUUCUGAGAAUUCAUGACAGAUAAAGCUG_AUAUAGAUCUGAGCUGAAU
(((((............))))).(((((((((......((((((((.((.(((....))).))))))....))))..........))))))))). ( -8.90 = -10.18 +   1.28)
 free energy of ensemble = -11.00 kcal/mol
 frequency of mfe structure in ensemble 0.50555;
>SNORD81
CAGAAUAC__AUGAUGAUCUCACCCCAACUUGAACUCUCUCACUGAUUACUUGAUGAUAAU_________AA__AAGAUCUGAUAUUCUG
.......(..((.((((((.........................)))))..).)))...................(((........))). (  5.13 =   5.27 +  -0.14)
 free energy of ensemble =   4.14 kcal/mol
 frequency of mfe structure in ensemble 0.929472;
>SNORD83
GCCACAUGAUGUUUGCAUUUUGAAA_GUGAGCGCUUUGCGCA__GUGACGACCCUUAUCUAUCACCCUUGACUGAUGGCU
...........(((........))).....((((...)))).............(((((..(((....)))..))))).. (  0.02 =   1.00 +  -0.98)
 free energy of ensemble =  -2.64 kcal/mol
 frequency of mfe structure in ensemble 0.538881;
>SNORD16
UGCAAUGAUGUCGUAAUUUGCGUCUUACUCCAUAUCCAGCGACAGUUGCCUGCUGUCAUUAAGCUGGUGCAGAAGGCUGACGAAAAU__GCGUACUGAGCA
(......)(((.........((((...(((((((((.(((((((((.....)))))).....)))))))))).))...))))................))) (-15.05 = -14.86 +  -0.19)
 free energy of ensemble = -18.05 kcal/mol
 frequency of mfe structure in ensemble 0.377202;
>SNORA72
CUGCGAAUA_UUCUCGCUGUUCUGAUU_UUGUAAUAAUCAGGGCAGGCUA__AACAUUCGCUAUAUUA_A__GACCAUGC_AU_G_UGU_CC_CCAGACCUAG_UUCU_U_UCC___CUAGGUCUGGUUUUAUAAAUGCUGGUGAUAAAC
..((((((........((((((((((..........)))))))))).........)))))).................((.((............((((((.(..............).))))))..........))))........... (-17.96 = -17.22 +  -0.74)
 free energy of ensemble = -19.71 kcal/mol
 frequency of mfe structure in ensemble 0.906594;
>Alpha_RBS
UAAUUUAAUC_UCU__G__UUGAGUAUCCU___AACGGGCUUUUCAA__U___GGUG___UUACCAU____UUA_______AAAUUAU_AGGAGUGCA__UAG__UGGCCCGUAUUGCAGGCAUUAACAUUCCUGAU
....((((((.(((.......((....((........))....))........))))...)))))..........................................(((.((...)).)))......(((...))) ( -5.47 =  -1.81 +  -3.65)
 free energy of ensemble =  -6.72 kcal/mol
 frequency of mfe structure in ensemble 0.949261;
>snoZ118
UGUUUGCUGUGAUGAUUCCUACAAGGACGGUAUCUGAGUGAGGAA__UCUUGAAAGAGUACUCCUCACGUGAUUACAUCCAAAACUGAUC__AGAGAU_UCUGAGCAAACA
..((((((..((...........((((.(..(((...(((((((.................)))))))..)))..).))))..................))..)))))).. ( -9.59 = -10.26 +   0.67)
 free energy of ensemble = -11.88 kcal/mol
 frequency of mfe structure in ensemble 0.587843;
>mir-6
UAAACGA_AGGGAACAGUUGCUGCUGAUGUAUU___UU_______AAUAUUCU______ACA__UCUAUAUCACAGUGGCUGUUCUUUUUGGUUCC
........(((((((..((((((.((.(((.....................................))).))))))))..)))))))........ ( -4.62 =  -3.68 +  -0.94)
 free energy of ensemble =  -5.49 kcal/mol
 frequency of mfe structure in ensemble 0.942551;
>mir-199
UGGACACC_CCGCCCCGCCUGCCCAGUGUUCAGACUACCUGUUCAGGAG__UCCGAA_GUGUACAGUAGUCUGCACAUUGG_UUAGGCUGGGCU_GGGAAAGCC
.......(.(..((..(((...(((((((.((((((((.(((.((..............)).))))))))))).)))))))....)))..))...))....... (-21.76 = -21.30 +  -0.46)
 free energy of ensemble = -22.55 kcal/mol
 frequency of mfe structure in ensemble 0.968311;
>snoZ105
UUGGCAUGAUGAGGAA_____UGAUACAUUUUUAUCUGAUUUUCAUGAUGUGAAUAAUUACCUCCUACUCAUUCUGA
............................................................................. (  6.63 =   6.63 +   0.00)
 free energy of ensemble =   6.34 kcal/mol
 frequency of mfe structure in ensemble 0.95806;
>SNORD34
U__CGCCUAUGAUGAUUUGCAA____UAUUACCUACAUUGUUUGAUCAUCAU____GUGAGAA__A___G__CAACUG_____CUGAGGCGC_A
.............................................................................................. (  6.69 =   6.69 +   0.00)
 free energy of ensemble =   6.60 kcal/mol
 frequency of mfe structure in ensemble 0.989021;
>snoZ103
AUGGAUGUGAUGAUCCUUUCCCCAGAUGAUCGACUAUGAUUAUACUGUGCGAUUUUG____UCUCUCU____UCGGAGA___AUUC_AAGCCAGAAA_UCUGAUCCAU
..(((...(((((((.(((....))).))))).............((.((.......................................)))).....))...))).. (  4.76 =   4.86 +  -0.09)
 free energy of ensemble =   2.65 kcal/mol
 frequency of mfe structure in ensemble 0.750988;
>SNORD42
_UGCA_UAUGAUGGAAAAA_UCU_AA_UCUUC_U_____GAAAAGUGUGAUGUCAUCAAAGGAACCACU__GAUGCA_
.............................................................................. (  6.57 =   6.57 +   0.00)
 free energy of ensemble =   5.87 kcal/mol
 frequency of mfe structure in ensemble 0.849108;
>SNORD58
UUGCUGUGAUGAC_UAUCUUAGGACACCUUUGGA_______UUAACCAUG______AAAAGA__AA__UA_______U__A____U___UCUGAGCAAC
.................((((((..................................................................)))))).... (  6.52 =   6.39 +   0.12)
 free energy of ensemble =   4.59 kcal/mol
 frequency of mfe structure in ensemble 0.909561;
>SNORD79
UACUGUUAGUGAUGAUUU_UU_AAAAUUAAA_CAGAUGGGAAUCUCUCUGAAAAAGA__AUGAAGAUUAAU___UUU__AAACUGAAACAGUA
..(((((...............................................................................))))).. (  5.14 =   5.20 +  -0.06)
 free energy of ensemble =   3.74 kcal/mol
 frequency of mfe structure in ensemble 0.922234;
>SNORD62
UCUCAGUGAUGUAAUUCCAAUAGAUCCUUCUGACCCUCCACUGUGGACUCAAUAGCAGGG_AGAUGAAGAGGACAGUGACUGAGAGA
((.....))(..............((((.((.....(((.((((..........)))))).).....)))))).............) ( -1.86 =  -2.69 +   0.83)
 free energy of ensemble =  -4.34 kcal/mol
 frequency of mfe structure in ensemble 0.750539;
>SNORD63
GUGCAAUGAUGCAUU___UUAU___U___CAACACAUCAUUCUGAA___A___A____CAGA__U__GUGU_GGAAAAC____UAAUGACUGAGCACA
((...((((((.......................))))))(((.............................))).............))((....)) (  2.65 =   2.96 +  -0.31)
 free energy of ensemble =   1.25 kcal/mol
 frequency of mfe structure in ensemble 0.90609;
>SNORA66
GUGCAAACUCGAUCACUAGCUCUGCAUGAUGUGGCAGAAGCGAAGGGAACCAGGUUUGCUAAAGUAAUUGUGGUGAUAGAAAUGUA___UUAG_CCUCAGA_____AGCUACUGAGGUGGCCCAUU_CUAUC_CUAGUACAG_UG
..(((((((...((.((.(((((((........)))).)))..)).))....)))))))............((..(((((............(.((((((...........))))))).......).))))..)).......... (-23.13 = -21.63 +  -1.50)
 free energy of ensemble = -24.64 kcal/mol
 frequency of mfe structure in ensemble 0.906617;
>SNORA70
CUGCAGCCAAUUAAGCCGACUGAGCUCCUUUCCUCAU__GGGGGCC_CGGUGUGCAAUGGCUGCAAACAGCA____GCCUCCUUGGUAGUGUA_UGCAGCCUGUUGC_____UUGUAUGGGUUGCUC_UAAGGGACCUUGGAGACAGCC
.((((((((.....((..((((..((((............))))...))))..))..)))))))).............((.((.(((.........((((((((............))))))))..........)))..))))...... (-25.64 = -21.63 +  -4.01)
 free energy of ensemble = -27.40 kcal/mol
 frequency of mfe structure in ensemble 0.935599;
>SNORD39
CGUG____GAUGAUGACACCUUGG_UAAUGCUGCAAACUCCCGAGUGCGCGGUGGGGAAGCCAACCUUGGAGAGCUGAGCG_UGCG
(((...........................................)))(.(((.(..(((............)))...)..)))) (  2.37 =   2.12 +   0.25)
 free energy of ensemble =   0.35 kcal/mol
 frequency of mfe structure in ensemble 0.848631;
>SNORD82
AGCACAAAUGAUGAACAACAAAGGGACUUAAUACUGAAAC__CUGAUGUUAC__A_UUGUAA___U_GUGCUGAU_GUGC_
................................................................................. (  6.63 =   6.63 +   0.00)
 free energy of ensemble =   5.83 kcal/mol
 frequency of mfe structure in ensemble 0.953234;
>snoZ168
GGGCCGAUGAUGCGAACCAUGCUCCUAUGGUCUA__ACCCUGU_GCGGAGGAUUUCCUAAGCAUA_UUUCCCAAGAGCUGAGGCCC
(((...(((........)))...)))..(((((.........(.(.(((((...............))))))).......))))). ( -1.83 =  -3.50 +   1.67)
 free energy of ensemble =  -4.78 kcal/mol
 frequency of mfe structure in ensemble 0.451069;
>snoZ159
GUCUCCGAUGAUGAUGUAAAUUUAU__ACUUUCGUUCUUCUGAAGUUG______________CAAUGUGGAAGAACAAUU_UGGAGACCUGAACUGAGGGGGU
..((((...........................(((((((((.........................)))))))))......((...))........)))).. ( -3.38 =  -2.99 +  -0.39)
 free energy of ensemble =  -4.97 kcal/mol
 frequency of mfe structure in ensemble 0.772486;
>nos_TCE
AGGAG_AGAAGCUCUGGCAGCUUCUGAAGCGU_UUAUAUAAUCAGAAAUAUAUAUGCGCGUUCCA
.......((((((.....))))))....((((..((((((........)))))).))))...... ( -7.05 =  -6.63 +  -0.42)
 free energy of ensemble =  -7.39 kcal/mol
 frequency of mfe structure in ensemble 0.940969;
>Hammerhead_1
AUCCAGCUGACGAGUCCCA________________________________________________________________________AAUAGGACGAA___ACGC_GCGUC___CUGGAU
..((((................................................................................................................)))).. (  5.47 =   6.48 +  -1.01)
 free energy of ensemble =   5.07 kcal/mol
 frequency of mfe structure in ensemble 0.977991;
>s2m
CAGUGCCGAGGCCACGCCGAGU_AGGAUCGAGGGUACAGCACUC
..((((.(..(((.((((......))..))..))).).)))).. ( -4.95 =  -2.96 +  -1.98)
 free energy of ensemble =  -5.79 kcal/mol
 frequency of mfe structure in ensemble 0.964508;
>Corona_pk3
CUACUCUUGUACAGAAUGGUAAGC_ACGUG_UAAUAGGAGGUAC_AAGCAA_CCUAUUG_CAUAUUA
((.......(((......)))))....(((.(((((((..............))))))).))).... ( -6.84 =  -2.38 +  -4.46)
 free energy of ensemble =  -7.49 kcal/mol
 frequency of mfe structure in ensemble 0.927602;
>PrrB_RsmZ
UGUGCCCACGGACAG__GCACAGGCCAUCAAGG_AUGAUGGCCAG____GGACAUCGC_AGGA_A_GCGAU_UCAUC_AGGAUGAUGA_A_A_GGA_AUACAGGGACUA_GGGAAAAAAUGUGGGCGGGUCAA___ACCGCCCCUUUUUUU_
.......................((((((.......))))))...........(((((........)))))..((((......))))............................((((...((((((.........))))))...)))).. (-26.56 = -22.58 +  -3.98)
 free energy of ensemble = -28.50 kcal/mol
 frequency of mfe structure in ensemble 0.918114;
>Purine
AAAAAAAAAAAAAAAAUAAC_U_CAUAUAAUCUCGGGAAUAUGG_CCCGAGA_GUUUCUACCAGGCAACC__GUAAAUUGCCU___GACUAUG_AGGGAAAUUGUUUUUUGU_
..................((.(.((((.....((((..........))))...........(((((((.........))))))...)..)))).)))................ (-12.46 =  -6.06 +  -6.40)
 free energy of ensemble = -12.88 kcal/mol
 frequency of mfe structure in ensemble 0.994907;
>Bacteria_small_SRP
_____GG_____CCC__GCGC__AACG_UUA__ACUCGUGAAC_CCGGUCAGGUCC_GGAAGGAAGCAGCCGU_AGCGAUU_UUU_G_GCG_U_GUG__CG_C_GGG_______C__GU________
...(.(((.(....(..((((....((.((......(((......(((.....(((.....))).....)))...)))........).))).....)..)).).).......))))).......... ( -9.08 =  -2.75 +  -6.32)
 free energy of ensemble =  -9.69 kcal/mol
 frequency of mfe structure in ensemble 0.996187;
>msr
GCUCUUUAGCGUA____GGACU____________GAUUA_CGUCUAGUCGGGUGUUUAGCCAGACUC__UAACUUAUUGAACGCA
....(((((........(((((..................)))))((((..((.....))..))))..........))))).... (  1.18 =   2.68 +  -1.50)
 free energy of ensemble =   0.43 kcal/mol
 frequency of mfe structure in ensemble 0.874709;
>CAESAR
AUGGAGACAUGGCAU___AAAGCCAGAGA__GUAAGAGACAUGAACUC_UU_AGACUGU__AACUU_GAACU_GAUUUACAUCUCAUUUU
...((((..((((........))))........................................(.(((.....))))..))))..... (  2.63 =   2.44 +   0.19)
 free energy of ensemble =   1.05 kcal/mol
 frequency of mfe structure in ensemble 0.75135;
>Hairpin
CAACAGCGAAGCGAACCAGAGAAACACACCUUGUGUGGUAUAUUACCUGGUA
..............(((((..((((.(((.....)))))...))..))))). ( -1.90 =  -0.78 +  -1.12)
 free energy of ensemble =  -3.60 kcal/mol
 frequency of mfe structure in ensemble 0.576438;
>HIV-1_DIS
GG_ACUC_GGCUUGCU_G_AAGUGC_ACA_CGGCAAGAGGCGA_GAG
.....((.(.((((((.(............)))))))...))).... ( -4.35 =  -3.72 +  -0.64)
 free energy of ensemble =  -4.73 kcal/mol
 frequency of mfe structure in ensemble 0.991256;
>Tombus_3_IV
GACCCAGACACGGUUGAUCUCACCCUUCGGGGGGGCUAUAGAGAUCGCUGGAAGCACUACCGGACAACCGGAACAUUGCAGAAAUGCAGCCC
..........((((.((((((.(((.......))).....)))))))))).........((((....))))....(((((....)))))... (-15.82 = -15.21 +  -0.62)
 free energy of ensemble = -17.85 kcal/mol
 frequency of mfe structure in ensemble 0.83308;
>mir-24
CUCCCGUGCCUACUGAGCUGAUACCAGUUUGCUUUUUA___UACACUGGCUCAGUUCAGCAGGAACAGGAG
..((.((.(((.(((((((((.............................))))))))).))).)).)).. (-12.50 = -12.26 +  -0.24)
 free energy of ensemble = -12.88 kcal/mol
 frequency of mfe structure in ensemble 0.964985;
>GAIT
GUAUGUGAAAGUGUAAAAUAGAAUGUUACUUUGGAAUGACUAUAAACAUUAAAAGAAGACUGGAAGCAUAC
..((((...(((.........((((((....(((.....)))..))))))........)))....)))).. ( -1.01 =  -0.82 +  -0.19)
 free energy of ensemble =  -2.24 kcal/mol
 frequency of mfe structure in ensemble 0.779328;
>REN-SRE
CUGCUUUGAGGACAAACAGAAUAAAGACUUCAUGUUU
..................................... (  6.03 =   6.03 +   0.00)
 free energy of ensemble =   5.44 kcal/mol
 frequency of mfe structure in ensemble 0.9288;
>SNORD113
UGGAUCA_AUGAUGACCA_______________CUGGUGG___CGUAUG_AGUCAUACAUGAUGA_AUACA_______________GUGUCUGGAACUCUGAGGUCCAU
..((((................................................................................................))))... (  5.93 =   6.31 +  -0.38)
 free energy of ensemble =   5.76 kcal/mol
 frequency of mfe structure in ensemble 0.995109;
>Corona_package
GACGGUGACGAUGUUAUCUUCAGCCGUACAGGGAGCCUUGAACCGAGCCAUUACCGGAGCCCACAAGGUAAUCCGGGUGGUAAUCGCGUGGGUGAUCUCAGCGGUAAUGAAGCUCUAGCACGUGGCACU
....((.(((.(((((.((((((((((...((((((((...((((((((((..((((((((.....)))..))))))))))..))).))))))..)))).)))))..)))))...)))))))).))... (-38.11 = -35.57 +  -2.54)
 free energy of ensemble = -39.97 kcal/mol
 frequency of mfe structure in ensemble 0.365258;
>G-CSF_SLDE
CUGAGGGU_CC_CACCUUGGGGCCCUUGGAAGCAUCAG_AG_GUCUCCCACGUGGGAGACAAGACAUCCCUG_UUUAAUAUUUAAACAGCAGUGUUCCCC
((..(((..((.((...)))).)))..)).............(((((((....)))))))..((((...(((.(((((...))))))))...)))).... (-17.14 = -17.52 +   0.38)
 free energy of ensemble = -18.32 kcal/mol
 frequency of mfe structure in ensemble 0.887707;
>PVX_3
CCAUAACUACGUCCACAUAACCGACGCCUACCCCAGUUUCAUAGUAUUUUCUGG
.........((((.........))))......((((..............)))) (  0.65 =   0.65 +   0.00)
 free energy of ensemble =   0.41 kcal/mol
 frequency of mfe structure in ensemble 0.907735;
>Flavi_CRE
CUGG_GAA_AGACCGGG__AGAU_CCU_CUGC_UCUCCC_____C_AA_CAUCA__UUC__AGGCACAGAGCGCCGG__AAAAUG_GAA_UGGUG_GUGAUG_AAAAAAACAGGAUCU
((((........))))...((.......))..............(.(..(((((..(((...(((.......)))...........))).)))))..))................... ( -8.26 =  -4.58 +  -3.68)
 free energy of ensemble =  -8.75 kcal/mol
 frequency of mfe structure in ensemble 0.990651;
>SNORD101
GU_UUGAAUGAUGACUU___A___A_A_U____UGUCGGAUACCCCUUCACUCC_UUUUAUGAGUGAA_ACAU_A_ACAGUCUGACAAAC
((.(........)))..................((((((((.....(((((((........)))))))...........))))))))... ( -7.96 =  -8.13 +   0.17)
 free energy of ensemble =  -8.81 kcal/mol
 frequency of mfe structure in ensemble 0.948841;
>SNORD102
AGCUUAAUGAUGAUUGUC_UUUUUGAUUGC__UUGAAGCAAUGUG_AAAAACACAUUUCACCGGCUCUGAAAGCU
............................((..((..(((....((.(((......)))))...)))....)))). (  0.98 =   0.92 +   0.06)
 free energy of ensemble =  -0.68 kcal/mol
 frequency of mfe structure in ensemble 0.783051;
>SNORD103
UCUGGCAAUGAUGACA__CACUUGCCCUCACUGAGAACA__AAGUUCGGUGAUGAGAACCUUUGUU__GG_C_____UAGUUCUGAGCCAGA
...(((((.............)))))((..((.(((.......((((........))))......................))).))..)). ( -1.00 =  -0.57 +  -0.43)
 free energy of ensemble =  -2.02 kcal/mol
 frequency of mfe structure in ensemble 0.960625;
>SNORD95
CCAACAGUGAUGACCACAACAUGCCAUCUGAGUUGCUUUGCUGAAAUCCAGAGGCUGUUUCUGAGCUG
....((((...((....((((.(((.((((.((..(......)..)).)))))))))))))...)))) ( -9.80 =  -9.61 +  -0.18)
 free energy of ensemble = -10.08 kcal/mol
 frequency of mfe structure in ensemble 0.936558;
>SNORA16
UGUGGCCCUUAUCGAAGCUG__C___AGC_UGCUUC__CACAUA__GCUGCUG__UGGUCAAAA_AGG_AGCCCAGAGUGACAGUU_UUCCUUGACGGU_____CGCCGUUCUGUUU___GCUGU_____AACUGA_UCU_GCAACA__UUUU__GGGAAAAGACAGUU
.......(((......((((..(...(((.((..........))..))))).....)))......)))................((.(((...................................................................)))))....... ( -0.32 =   1.55 +  -1.87)
 free energy of ensemble =  -2.59 kcal/mol
 frequency of mfe structure in ensemble 0.880916;
>SNORA57
CCUCCUUUUCUUGGCGGGGACC_GGGCGUGCGGUCCCGCUCCCCG_UAAUGUACGGAGGCAGAGGG_AAAGGG__CUCCGGCCCCCUCGGCGUCAUGUCUUCGGUGCC_G__G_CG_G_CUUCCCGUCCGCCGGUUCUAUCCUCAAGCGCCGGGACACGG
(((((........(((((((.(.(((........)))).)))))).).......))))).....................(....)((((((...((.....((.(((.(..(.((.(.........)))))))).)).....))..))))))....... (-37.19 = -35.08 +  -2.11)
 free energy of ensemble = -39.68 kcal/mol
 frequency of mfe structure in ensemble 0.856114;
>BLV_package
AUGGGAAAUUCCCCCUCCUAUAACCCCCCCGCUGGUAUCUCCCCCUCAGACUGGC
..(((....................)))..((((((.............)))))) ( -1.58 =  -1.62 +   0.04)
 free energy of ensemble =  -3.05 kcal/mol
 frequency of mfe structure in ensemble 0.619891;
>Rubella_3
UACUUGCGCGGCGCUAUAGCGCCGCGCUAGUGGGCCCCCGCGCGAAACCCGCACUAGCCCACUAGAUU
.(((.(((.(((((....))))).))).)))((((....(((.(....))))....))))........ (-18.31 = -18.83 +   0.52)
 free energy of ensemble = -18.82 kcal/mol
 frequency of mfe structure in ensemble 0.967426;
>RsmY
AUGGACGUAGCGCAGGAAGCGCAA__AGACAGAACAGGGAC____AC_GCAGGACAUCCUGCCAGGAUGGCG_GGGUGACAAGGAUGU__CAGGGAAACAGUCUGC_AAAGCCCCGCUUC___GGCGGGGUUUU
.(((((...((((.....))))............................(((....)))........................................)))))..((((((((((.......)))))))))) (-21.78 = -21.09 +  -0.69)
 free energy of ensemble = -23.72 kcal/mol
 frequency of mfe structure in ensemble 0.751019;
>AMV_RNA1_SL
GUUUUUAUCUUACACACGCUUGUGCAAGAUAGUUA
....(((((((.((((....)))).)))))))... ( -2.27 =  -2.47 +   0.19)
 free energy of ensemble =  -2.69 kcal/mol
 frequency of mfe structure in ensemble 0.894215;
>SL1
GGUUUAAUUACCCAAGUUUGAGGUAAUUGAAUGUUUCGGCCCAGAGUUUCGGCUGCUGUGGCUUGAAGUGAAAUUUUGGAACGUCCUGCA__UUAG_CGGGACAAC
.(((((((((((((....)).)))))))))))(((((.(((((.(((....)))..)).)))..))))).............(((((((......).))))))... (-23.56 = -22.67 +  -0.89)
 free energy of ensemble = -24.49 kcal/mol
 frequency of mfe structure in ensemble 0.947523;
>SL2
GGUUUUAACCCA_GU_UAAC_CAAGGUUA_GCAUGGAAUUCCGACCUUUCG__AAA__GAGUGUGUCGAAU___AACAAU_AAUUUUUGGAAC_______AGCUUCUUCGGGGUU_UCCGGUGAAGCAAA
(((....)))...((..(((.....)))..)).........(((((.(((........))).).))))..................................(((((...((.....))..))))).... ( -5.62 =  -3.75 +  -1.87)
 free energy of ensemble =  -7.15 kcal/mol
 frequency of mfe structure in ensemble 0.920499;
>snoZ199
GGAUCAAGUGAUGAGA_______AAAUAACUGCAACAAUAUGAUGGGAGCUUUGCUCCUGUGAUUCC___UA_GUAUUUAAGUCUCUGA____________UG_AUC
............(((...............(((......((.((((((.......)))))).)).........))).......)))..................... (  1.11 =   1.56 +  -0.45)
 free energy of ensemble =  -0.07 kcal/mol
 frequency of mfe structure in ensemble 0.89361;
>snoZ278
GCCCAUGAUGAGCUGCCCAAUGAUUAGAGGGUGUAGUUGGCUCAAGUUCCUGUUUAUCAGGAAGAACCUACUUGCAGCUGCUGCAUUCACAUGUUAUCAACGGGCUUCCUGAGGU
((((.((((((..((.............(((((((((.((((((((((((((.....))))).......))))).))))))))))))).))..))))))..))))..((...)). (-25.86 = -26.04 +   0.19)
 free energy of ensemble = -28.13 kcal/mol
 frequency of mfe structure in ensemble 0.590104;
>snoR66
UCCCAUGAUGGCAUGAA_UCUUUGAGACCUGACA___UUCUUC__UGAUGAAA_AACACAAGCAUAAUCCCUGAGGAC
....(((...........((.((((((...........))))....)).))...........)))...(((...))). (  4.74 =   5.60 +  -0.86)
 free energy of ensemble =   2.45 kcal/mol
 frequency of mfe structure in ensemble 0.537676;
>snoR160
AGCAAAAUGAGGAGGUUAUUUG_____AUCUGAAG____AUCUAAUGUGGAUA_CAU_CAUU___CAU___GGUCUUCAAAGUUCUCUGA_UUGCU
................................................................................................ (  6.75 =   6.75 +   0.00)
 free energy of ensemble =   5.75 kcal/mol
 frequency of mfe structure in ensemble 0.835525;
>snoR12
UUGAGGGUGAUGAAGAAAAUCAUUCGGAUUCCCAUUGAUUUC_________UCGAAA___UGUGAUUUUAA_AACCAGCUACUUCUGACUCAU
..((((((..........)))....((....))..........................................(((......))).))).. (  2.44 =   3.96 +  -1.52)
 free energy of ensemble =   1.24 kcal/mol
 frequency of mfe structure in ensemble 0.805094;
>snoR41
UUGGAGGCUGUGAUGACCAAAAAAAUACCUACCUAUUUUCUGAGGGAUU_____CCAGU______CCUUCUGAUUGAUAGAA___ACCAAUGGAUCCUUCUGAGCCUGCCA
..(((((((..((.(((((.............(((((.((.(((((((.........))......))))).))..)))))..........))).))..))..))))).)). ( -8.19 = -10.07 +   1.88)
 free energy of ensemble = -10.63 kcal/mol
 frequency of mfe structure in ensemble 0.568151;
>U54
AGCUCAGUGAUUGCAGCCAAUUACAU____UGGCAAUAUACGCUAUUCUGAUU__UAUUUUGAUGAAAAAUAAAA__________UUAUGAGAGCU
..(((....................................................................................))).... (  6.67 =   6.72 +  -0.05)
 free energy of ensemble =   6.09 kcal/mol
 frequency of mfe structure in ensemble 0.956242;
>K10_TLS
CUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAG
..(((((((((((((((........))))))).))).))))).. (  0.90 =   0.90 +   0.00)
 free energy of ensemble =  -0.11 kcal/mol
 frequency of mfe structure in ensemble 0.72052;
>snoR72
UUGCAAAUGAUGAGUUAAAUCACCAUUGAUAAAAGAAGCUCAAUUGAGCAGUGUUGGAAAUCAAAAACUUCCAUGACUCUGAUGCAA
..(((((((.(((......))).))))..........((((....))))(((..(((((.........)))))..)))....))).. ( -8.46 =  -9.26 +   0.80)
 free energy of ensemble =  -9.83 kcal/mol
 frequency of mfe structure in ensemble 0.641075;
>SNORD35
GGCAGAUGAUGUCCUUA__CUCACGAUGGUCUUCGGAUGCC_CACUUGG_____GCAAUGCCGACAAUGCCA_AUGGCUAAGCUGAUGCCAGGAA
((((........................(((..((..(((..............))).))..)))...(((....)))........))))..... (  0.01 =   0.26 +  -0.25)
 free energy of ensemble =  -2.18 kcal/mol
 frequency of mfe structure in ensemble 0.640896;
>SNORD38
UCUC_GUGAUGAAAACUUUGUCCAGUUCUGCUACUGA__CGGAAAGUGAUGAUAA__AGUUUGU_CUGAGGAGA
......................((((......))))...................................... (  4.77 =   4.89 +  -0.12)
 free energy of ensemble =   2.49 kcal/mol
 frequency of mfe structure in ensemble 0.590379;
>snoR38
UUAAGCU_GAUGAUGAUAUAA_______________ACAGUUAUCCCUGUCUGAA___G________________AAUCUUUUGUGAUGAGAAAU__GGUAUUCUGAGACUCAA
..(((((....................................................................................................))))).. (  3.73 =   5.32 +  -1.59)
 free energy of ensemble =   3.16 kcal/mol
 frequency of mfe structure in ensemble 0.952543;
>Retro_dr1
UGUAACGGGGCAAGGCUUGACUGAGGGGACUAUAGCAUGUAUAGGCGAAAAGCGGGGCUUCGGUUGUA_CGCGG_UUAGGA_GUCCCC_UC_AGG
(....(........)....)(((((((((((....(.(((.(((.((..((((...)))))).))).).)).).....))...))))).))..)) (-12.41 = -11.72 +  -0.69)
 free energy of ensemble = -14.40 kcal/mol
 frequency of mfe structure in ensemble 0.883228;
>Tombus_3_III
AGCGAGUAAGACAGACUCUUCAGUCUGAGUUUGUGGAAACGAGUGUA__AAUCUGGCAUAGCAUACAGGUUA
........((((.((....)).))))...........(((..(((..................)))..))). (  3.66 =   4.36 +  -0.71)
 free energy of ensemble =   1.97 kcal/mol
 frequency of mfe structure in ensemble 0.907082;
>SNORD20
UGGAUAU_GAUGAC__UGAUU_AUCUGAGAAAUAACUGAUGAAAUCUCAAGAAAAUUCCUCUAGAUAGUCAAGUUCUGAUCCAG
.(((....((......(((((.(.(((((.............................))).)).))))))...))...))).. ( -0.63 =  -0.95 +   0.33)
 free energy of ensemble =  -2.43 kcal/mol
 frequency of mfe structure in ensemble 0.798379;
>SNORD46
AAGUAGGGUGAUGAAAAAGAAUCCUUAGGCGUGGUUGUGGCCGUCUUGGUCACCUGUGUGCCACUUGCCA_AUGCAAGGACUUGUCAUAGUUACACUGACUGU__
..(..(((((((........)))....((((((...((((((.....))))))...)))))).(((((.....))))).))))..)(((((((...))))))).. (-14.68 = -16.36 +   1.68)
 free energy of ensemble = -17.99 kcal/mol
 frequency of mfe structure in ensemble 0.341421;
>Rhino_CRE
GGCUUGGGUGAUGAAUUAGAAGAAGUCAUUGUCGAGAAAACGAAACAGACGGUGGCUUCAAUCUCAUCUGGACCAAAACACACACA
.........((((........((.((((.((((..............)))).)))).)).....)))).................. ( -2.08 =  -1.49 +  -0.58)
 free energy of ensemble =  -3.34 kcal/mol
 frequency of mfe structure in ensemble 0.842476;
>SNORD43
CACAGAUGAUGAACUUAUUGACGGGCGGACAGAAACUGUGUGCUGAUUGUCACGUUCUGAU_U_
..........((((....(((((((((.((((...)))).))))...))))).))))....... ( -5.20 =  -5.57 +   0.38)
 free energy of ensemble =  -6.15 kcal/mol
 frequency of mfe structure in ensemble 0.680805;
>IRES_Tobamo
GAAUUCGUCGAUUCGGUUGCAGCAUUUAAAGCGGUUGACAAUUUCAGGAAAAAGAAAAAGAAGAUUGGAGGAAGGGAUGUAAUUAGUAA___GUAUAAGUAUAGACCGGAGAAGUACGCCGGUCCUGAUUCGUUAAAUUAUAAAGAAGAAAAUG
(((((....))))).(((...((((((.......((..((((((.................))))))..))...)))))).......................((((.(.(.....).).))))....(((.(((.....))).)))...))). ( -6.34 =  -5.10 +  -1.24)
 free energy of ensemble = -10.62 kcal/mol
 frequency of mfe structure in ensemble 0.370671;
>FIE3
UGAUAAUG________GCUCAA___CUUGGAGACUGACAA________ACAUGUUUUUAU__A_______________UUGUACAGAAAAUA
...........................(((((((..................)))))))................................. (  3.29 =   3.65 +  -0.36)
 free energy of ensemble =   3.05 kcal/mol
 frequency of mfe structure in ensemble 0.923702;
>Spi-1
CUCACCCAGGGCUCCUGUAGCUCAGGGGGCAGGCCUGAGCCCUGCACCCGCCCCACGACCGUCCAGCCCCU_GACGGGGCACCCCAUCCUGA_GGGGCUCUGCAUUGGCCCCCACCGAGGCAGGGGAUCUGACCGACUCGGAGCCCGGCUGGAUGUUACAGGCGUGCAAA
......((((((((..((.((((...))))..))..)))))))).........((((.((((((((((((((..(((((.......))))).)))))..((((.((((......)))).))))(((.((((.......)))).))).)))))))......)))))).... (-50.10 = -51.14 +   1.04)
 free energy of ensemble = -52.98 kcal/mol
 frequency of mfe structure in ensemble 0.392872;
>Tymo_tRNA-like
UUAG_GUCGCCAGU__GCGACGCCCGUUCCCACACAACGGUU_AAU_CG_GGUGCAACUCCCCCC_CCUAUCCCGAG_GGUCAUCGGGACCA
.....(((((......))))).((((((.......)))))).......(.((.......))).........(((((.......))))).... (-19.40 = -14.45 +  -4.95)
 free energy of ensemble = -19.63 kcal/mol
 frequency of mfe structure in ensemble 0.986588;
>Plasmid_RNAIII
ACAGAUAUUUAAGUAUCUGAUUAAUAAAGUAAUUAAAUACUUUACCAAAUUUUGGGUCUCGACUUCUUUAAUUGAUUGGUGGUAAUCAAUUAAGGCUCGCAACUUAUUUUCUUGGCGGAAAAUAAGUUGGU
.(((((((....))))))).....(((((((......)))))))((((...))))....(((...(((((((((((((....))))))))))))).)))(((((((((.(((....))).))))))))).. (-29.93 = -27.99 +  -1.95)
 free energy of ensemble = -31.24 kcal/mol
 frequency of mfe structure in ensemble 0.738464;
>ctRNA_pGA1
GCUUUCUCCCAGGUUGG____GACUGGGUGAUAAGC_GAGCGUCGAACGGGUU__GCCGCCGGUUCGGCGCUCAU__UUUUUCGU_GU
(((..(.(((((...........))))).)...)))..((((((((((((((......))))))))))))))................ (-28.94 = -25.14 +  -3.80)
 free energy of ensemble = -29.46 kcal/mol
 frequency of mfe structure in ensemble 0.945823;
>mir-9
AUCUUUGGUUAUCUAGCUGUA_UGAGUGU_UUUUG____ACAU_CAUAAAGCUAGAUAACCGAAAGU
...((((((...((((((.((.(((.................).)))).))))))...))))))... (-10.97 = -10.83 +  -0.14)
 free energy of ensemble = -11.33 kcal/mol
 frequency of mfe structure in ensemble 0.986415;
>ctRNA_pND324
UAG_AAAUAUGCUCC__UUGUGAGUGAUUUUA__GA_UAAGCAUAGAGAAAGUCAUUUCGCCGUGA_AUUUUCUCUAUG_CUU_UUAUUAUAUCA
.......................................(((((((((((...(((......))).....))))))))).))............. ( -8.09 =  -6.39 +  -1.70)
 free energy of ensemble =  -8.90 kcal/mol
 frequency of mfe structure in ensemble 0.973084;
>mir-124
GUUCUUCUCUUCGUGU____UCACAGCGG___ACCU_UGAUUUAA__UGUC_AUACAAUUAAGGCACGCGGUGAAUGCCAAGA_GCGGAGCC
......(((...((((.....(((.((......(((..((((..............)))).)))...)).))).))))...)).)....... ( -3.87 =  -2.69 +  -1.17)
 free energy of ensemble =  -4.35 kcal/mol
 frequency of mfe structure in ensemble 0.986124;
>RNA-OUT
UCGCACAUCUUGUUGUCUGAUUAU_______UGAUUUUUGGCGAAACCAUUUGAUCAUAUGACAAGAUGUGUAUCCA
..((((((((((((((..........................................))))))))))))))..... (-11.41 =  -9.96 +  -1.45)
 free energy of ensemble = -12.58 kcal/mol
 frequency of mfe structure in ensemble 0.888362;
>mir-8
CGCUGUG_GCAUCUU_ACCGGGCAGUGUUGGAUGGUGUA______AAGUCUCUAAUACUGUCUGGUAAUGAUGA_CGCCGGU
..(..((.(((((((.((((.((((................................)))).)))))).))))).))..).. ( -9.51 =  -7.07 +  -2.44)
 free energy of ensemble = -10.45 kcal/mol
 frequency of mfe structure in ensemble 0.889585;
>ctRNA_pT181
AUACAAAAU____UAAAAAAACAA____CUCAGUGUUUUU__UCUUUGA__GAUGUCGU__UCAC__AAACUUUGGUCAG___GGCGUGA_GCGACUUCUU___UUUAUUUUGUU
......................................................(((((..((((.....((((....))...)).)))).)))))................... ( -3.37 =  -2.61 +  -0.76)
 free energy of ensemble =  -4.21 kcal/mol
 frequency of mfe structure in ensemble 0.918845;
>traJ_5
ACGUGGUUAAUGCCACGUUAAAAUAUGAAAUUGAAAAUCGCCGAUGCAGGGAGAUGGUCCCUCCCUGCAUCGACUGUCCAUAGAAUCCUUUG__AGGAGGUUCCUAUGUAU
.((((((....))))))........................((((((((((((.......))))))))))))......(((((...(((((....)))))...)))))... (-30.90 = -30.43 +  -0.47)
 free energy of ensemble = -32.70 kcal/mol
 frequency of mfe structure in ensemble 0.614947;
>mir-26
UGGCCGCGUUCAAGUAAUCCAGGAUAGGCUGUG_AGCUCCCAA__GGCCUAUUCUUGAUUACUUG_CUCG_GGGAC
...(((((..(((((((((.((((((((((...............)))))))))).)))))))))...)).))).. (-20.36 = -21.44 +   1.08)
 free energy of ensemble = -21.30 kcal/mol
 frequency of mfe structure in ensemble 0.736323;
>mir-19
UACGGUUAGUUUUGCAGGUUUGCAUUUCAGC_______UAUAUG_AUAUGUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAU
..((((((((((((((...(((((...(((.......................)))))))).....)))))))))))))).... (-16.91 = -15.43 +  -1.47)
 free energy of ensemble = -17.42 kcal/mol
 frequency of mfe structure in ensemble 0.981959;
>mir-135
AUUCACUGCUGUGCUCUAUGGCUUUUUAUUCCUAUGUGAUU__CUAAUAAAAACUCAUGUAGGGAUAGAAGCCAUGGGAUACAGUGUGGAAA
...(((....((.(((.((((((((....((((((((((...............))))))))))...)))))))).))).))...))).... (-20.90 = -19.11 +  -1.79)
 free energy of ensemble = -21.43 kcal/mol
 frequency of mfe structure in ensemble 0.973718;
>mir-160
GUGUGCCUGGCUCCCUGUAUGCCACACGUGUAGACCAACAAAUGUUGU__A________________________________________________UGUCUACUGCGGGUGGCGUGCA_AGGAGCCAAGCAUGA
..((((.(((((((.((((((((((.((((............................................................................)))).))))))))))..))))))).)))).. (-28.52 = -27.63 +  -0.89)
 free energy of ensemble = -29.04 kcal/mol
 frequency of mfe structure in ensemble 0.886827;
>mir-148
UGUUCACCU_GGCCCAAGUUCUGUGAUACACUCCGACUCUGGCUCUG_GAGAAGUCAGUGCAUGACAGAACUUUGGCCCGGAAGGACC
..(((..((.((((((((((((((.((.((((..((((((.........)).)))))))).)).)))))))))))))).))..))).. (-26.80 = -24.84 +  -1.96)
 free energy of ensemble = -28.22 kcal/mol
 frequency of mfe structure in ensemble 0.631449;
>mir-46
AGCUGA_AGAGAGCCGUCUAUUGACAGUUCGAUUC______CAAUCUGGUACUGUCAUGGAGUCGCUCUCU_UCAGAUGA
..((((.(((((((..(((((.((((((......................)))))))))))...))))))).)))).... (-25.08 = -24.08 +  -1.00)
 free energy of ensemble = -25.48 kcal/mol
 frequency of mfe structure in ensemble 0.943135;
>mir-TAR
GGGUCUCUCUAGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAGCUAGGGAACCCAC
..((.(((.(((((((..........(((......)))......))))))).))))).... ( -1.85 =  -1.05 +  -0.80)
 free energy of ensemble =  -2.40 kcal/mol
 frequency of mfe structure in ensemble 0.980364;
>mir-219
GCUCCUGAUUGUCCAAACGCAAUUCU____CGAGUCUAUGGCUCCGGCCGAGAGUUGAGUCUGGACGUCCCGAGCC
......(((.(((((..(.(((((((....((................))))))))).)..))))))))....... (-12.25 = -11.48 +  -0.77)
 free energy of ensemble = -13.67 kcal/mol
 frequency of mfe structure in ensemble 0.837885;
>mir-101
UGCCCUGGUUCAGUUAUCACAGUGCUGAUGCUGUCUAUCUUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCA
...((....((((((((((((((((.(.((((............))))).)))))))))))))))).....)).. (-21.36 = -20.24 +  -1.12)
 free energy of ensemble = -22.17 kcal/mol
 frequency of mfe structure in ensemble 0.946481;
>mir-16
GCUCCGCUCUAGCAGCACGUAAAUAUUGGCGUAGUGAAAUAAAUAUUAA_CACCAAUAUU_ACUGUGCUGCUUCAGUGAGGC
....(((...(((((((((..((((((((.......................))))))))...)))))))))...))).... (-17.51 = -16.60 +  -0.91)
 free energy of ensemble = -18.08 kcal/mol
 frequency of mfe structure in ensemble 0.925978;
>mir-218
GGCAGCGGGGUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUUGAACGA____UAC___AA___AUAGAACAUGGUUCUGUCAAGCACCAUGGAACG_CC_CCGCGCUC
....(((.((((((((...(((((((((..((((((((..............................))))))))..)))))))))...)))))).))..))).... (-33.11 = -31.38 +  -1.73)
 free energy of ensemble = -33.68 kcal/mol
 frequency of mfe structure in ensemble 0.950538;
>mir-196
UCGAA_CUGUUGAGUGAUUUAGGUAGUUUCAUGUUGUUGGGAUUCACUUU_U_AA_CUCUACAACAUGAAACUGCCUUAAUUAC__CCCAGUUACA
....(.(((....(((((..((((.((((..((((((.(((...............))).))))))..)))).))))..)))))....)))).... (-15.59 = -14.07 +  -1.52)
 free energy of ensemble = -15.83 kcal/mol
 frequency of mfe structure in ensemble 0.97163;
>mir-194
AUGGUG__UCA_UCAAGUGUAACAGCAACUCCAUGUGGA_A__UGGCCCCAAGU_U_CCAG_UGGAGAUGCUGUUACUUUUGA_UGGU_UACCAA
..((((..(((.((((..(((((((((.((((((.((((................).)))).))))).)))))))))..)))).)))..)))).. (-34.69 = -32.09 +  -2.60)
 free energy of ensemble = -35.24 kcal/mol
 frequency of mfe structure in ensemble 0.969805;
>mir-130
UGCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCUGUCACUAGCAGUGCAAUGUUA_AAAGGGCAUUGGCCGUGUA
....((((((.((((((((.((((((((((.((................)).)))))))))).).))))))).))))))..... (-25.66 = -24.78 +  -0.88)
 free energy of ensemble = -26.78 kcal/mol
 frequency of mfe structure in ensemble 0.818192;
>IFN_gamma
CAUUGUUCUGAUCAUCUGAAGAUCAGCUAUUAGAAGAGAAAGAUCAGUUAAGUCCUUUGGACCUGAUCAGCUUGAUACAAGAACUACUGAUUUCAACUUCUUUGGCUUAAUUCUCUCGGAAACGAUGAAAUAUACAAGUUAUAUCUUGGCUUUUCAGCUCUGCAUCGUU
(((((((.......((((((((..(((((..(((((.....((((((....((((...))))))))))...((((....((.....))....))))))))).)))))....))).))))))))))))((......((((((.....))))))....((...))....)) (-21.12 = -22.72 +   1.60)
 free energy of ensemble = -25.33 kcal/mol
 frequency of mfe structure in ensemble 0.255226;
>HepC_CRE
UACAGCGGGGGAGACAUAUAUCACAGCGUGUCUCGUGCCCGACCCCGCUGG
...(((((((((((((............))))))........))))))).. (-13.03 = -12.23 +  -0.80)
 free energy of ensemble = -13.29 kcal/mol
 frequency of mfe structure in ensemble 0.991905;
>sar
GUUGGUUUUUCUCCAAGGAUUUACUGACAACCGAAGCCCUGACUGUUACCGCAGUUGGGGCUUCAACU
((((((...(((....)))...))))))(...((((((((((((((....))))))))))))))...) (-25.96 = -24.27 +  -1.69)
 free energy of ensemble = -26.55 kcal/mol
 frequency of mfe structure in ensemble 0.787383;
>SNORA68
CUUGCAC_CU___AAACCCAA__GAACCGCUGUU_UCUUGU_AGCAGCGGUUUAAACAGAGGUGCAAACAGC_A_AGUG_GACCUCGUCGCCUUUGGGGGGCUG_UG_GCUGUGCCCCUCAAAGUGAAUUUGGAGG_UUCUACACCC
.....((.((.............(((((((((((........)))))))))))......))))...............(..(((((.((((.((((.(((((...........))).)))))))))).....)))).).)....... (-21.01 = -17.13 +  -3.88)
 free energy of ensemble = -22.56 kcal/mol
 frequency of mfe structure in ensemble 0.907895;
>SNORA64
GGUCUCUCAGCUCUGCUUAAUCACAC___GGGUCCAGUGUGUGCUUGGCGUAUUUUCGGGGAGGCAGAGAAAGGCUCUCCUAAUG_ACCACAGACCGGCCCAGAA_UGGCCUCUCUUUUCCU_AGGAGUGCGACAGGU
.(((((((.(...(((..((.(((((............))))).))...)))....).)))))))...........(((((..........(((...(((.......))).))).........))))).......... (-17.88 = -16.22 +  -1.66)
 free energy of ensemble = -20.26 kcal/mol
 frequency of mfe structure in ensemble 0.650984;
>SNORA69
AAAGCAGGUUGCAAUUACAGUGCUUCAUUUU_GUG______GAAGUACUGCCAUUAUCCUGCUGAAAGAA_AAGC_UGUGUU_GAUCA_UUUUUGAUUUUGCCUU_UA_UGAGGGU_AAAAUCAUGACAGAUUGACAUGGACAAUU
..((((......(((..(((((((((...............)))))))))..)))....)))).............((((((.(((.......(((((((((((........)))).)))))))......)))))))))....... (-23.31 = -21.32 +  -2.00)
 free energy of ensemble = -25.84 kcal/mol
 frequency of mfe structure in ensemble 0.773737;
>snoZ17
GGUGCAAAUGAUGAC_ACUGUUAAGCGACCAAAGUCUGAUCAAAA_UGAUUGCU__CCUCAUUGUCUGA_UGCACC
(((((...................)).)))...((....................................))... (  5.28 =   5.58 +  -0.30)
 free energy of ensemble =   4.17 kcal/mol
 frequency of mfe structure in ensemble 0.933264;
>snoR64
CUUCUGCGGUGAUGAAUUAAGAAAA__AAAUUCACAUGUCAGACUUCAGAGAUU_CUUGU_______AAUCAAUGAGAAGAA_AAUUCAUAUUU_CUGAGCAGAAA
...((((........................((........)).((((..((((.............))))..))))......................))))... ( -0.48 =   0.81 +  -1.30)
 free energy of ensemble =  -1.81 kcal/mol
 frequency of mfe structure in ensemble 0.857982;
>snoZ7
CCGAUGAUGAUUAUUGCUAAACUAUGGAAUUACCGUCUGAGUUUAUU_CUUUGACGAGAAAAACGCUGGCUUACUGAGG
(((.............(((.....)))......((((.(((.......))).))))..........)))((......)) ( -2.68 =  -2.68 +   0.00)
 free energy of ensemble =  -5.35 kcal/mol
 frequency of mfe structure in ensemble 0.420535;
>SNORD61
GCUAUGAUGAAUU__UGAUUG______C_AUUGAUCAUCU_GAAAUGAU_AAUGUAUU____UUGUCCUCUAAGAAGUUCUGA_GCUU
........................................................................................ (  6.66 =   6.66 +   0.00)
 free energy of ensemble =   6.62 kcal/mol
 frequency of mfe structure in ensemble 0.998452;
>SNORD60
AGCCUGUGAUGAAUUGCUU____UAAUUUCUGACACCUCGUAUGAAAA__CUGC____AC_GUGCAG__U___CUGAUUAUA_UUGCAA_GACUGAGG__CUU
((.........................(((..((.....))..))).(..((((.........))))..)......................))(((...))) ( -2.54 =  -2.01 +  -0.53)
 free energy of ensemble =  -3.78 kcal/mol
 frequency of mfe structure in ensemble 0.912212;
>SNORA67
AUCCAAGGUGAUUCCCUCUCCAAGGGGCUGAUCU_UGUGCCCCUC_UCAGGAAAGUAGCAACUUGGAAGAAAACCAGGCAUGCCUAAGGUCUUUGGUGAACAGGGGA________UGCUUGUUUCCUUUGCCUUCCUCUGGCUGCCUACAUGU
.((((..((..((((.......((((..............)))).....))))....))....)))).........((((.(((..(((.....((.(((......................))).))......)))..)))))))....... (-12.86 = -12.32 +  -0.54)
 free energy of ensemble = -15.85 kcal/mol
 frequency of mfe structure in ensemble 0.667962;
>SNORD59
CCUU_CACUGAUGAUU_____ACCUUCUGAC_UUUCGUUCUUCUGAGUUUGC____UGAAGCC_AGA_UUCCAU_UCCUGAGAAGG
..........((((....................))))((.(((.((..............................)).))).)) (  6.08 =   6.01 +   0.07)
 free energy of ensemble =   4.50 kcal/mol
 frequency of mfe structure in ensemble 0.898729;
>SNORD57
UGGAGGUGAUGAACUGUC_U____U___AGCCUGACCUU_GUAGAGUGGAGGC____AAA____AA_____AACUGAUUUAAUGAGCCUGAUCC
.............................................................................................. (  6.64 =   6.64 +   0.00)
 free energy of ensemble =   6.39 kcal/mol
 frequency of mfe structure in ensemble 0.982198;
>SNORD56
CUACAAUGAUGGCAAUAUUUUUCAUCAACAGCAGUU_CACCUAGUGAGUGUUGACACUUUGGGUCUGAGUGA
((..........((((((((......(((....))).........))))))))........))((.....)) ( -1.30 =  -1.24 +  -0.06)
 free energy of ensemble =  -2.59 kcal/mol
 frequency of mfe structure in ensemble 0.741247;
>SNORD52
GGGAAUGAUGAUU_UCACAGACUAGAGUCUCUGACGC_UGGUCCUGAUGUCA_AAAUU__AAGUUCUGACUC
(((...........((..((((....))))..))........)))((.(((................))))) (  1.46 =   1.33 +   0.13)
 free energy of ensemble =   0.35 kcal/mol
 frequency of mfe structure in ensemble 0.913915;
>SNORD49
UGCUCUGAUGAAACCACUAA____UAGGAAGUGCCGUCAGAAGCGAUAACUGACGAUA_ACUAUUC____CUGUCUGACU
..........................(..(((..(((.....)))...)))..).......................... (  3.61 =   3.60 +   0.01)
 free energy of ensemble =   3.20 kcal/mol
 frequency of mfe structure in ensemble 0.976762;
>SNORD50
UAUCUAUGAUGAU_CCUAUCCCGAACCUGAAUU__CCUGUUG__AAAAAAAACAUAUA_CGGAUCUGGCUUCUGAGAU
..........((..((.((((.......................................))))..))..))...... (  4.48 =   4.56 +  -0.08)
 free energy of ensemble =   3.31 kcal/mol
 frequency of mfe structure in ensemble 0.929766;
>SNORD45
GGUCAAUGAUGUAAUGGCAUGUAUUAGCUGAAUCUAAAGUUGAUG____________UGAGUUCUAAAAUUACACUGAGACCU_
.................................................................................... (  6.68 =   6.68 +   0.00)
 free energy of ensemble =   5.78 kcal/mol
 frequency of mfe structure in ensemble 0.876099;
>SNORD51
CUGGUUACAUGAUGAAUAAAAUCAAAUCACCAUCUUUCGGCUGAGCUCGUGAUGGAUUUGCUUUUUU_CUGAUAAAGCUG
.................((((.(((((..(((((....(((...)))...)))))))))).))))............... (  0.47 =  -0.21 +   0.68)
 free energy of ensemble =  -0.92 kcal/mol
 frequency of mfe structure in ensemble 0.85185;
>SNORD47
AACCAGUGAUG_UAAUGAUUCUGCCAAAUGAAAUA_GAAUGAUAUCA_CC_C_AAAAACCGUUCCAUUUUGA_UUCUGAGGUU
................................................................................... (  6.70 =   6.70 +   0.00)
 free energy of ensemble =   5.38 kcal/mol
 frequency of mfe structure in ensemble 0.898068;
>SNORD48
GGUAAUGAUGACCCCAGGUGAUUCUGAGUGUC_UCGCUGACGCCAUCACCGCAGCGCGCUGACC
(((.......)))...(((((...((.(((((......)))))))))))).(((....)))... ( -5.75 =  -6.39 +   0.64)
 free energy of ensemble =  -7.12 kcal/mol
 frequency of mfe structure in ensemble 0.757291;
>SCARNA18
UGGCCGAUGAUGACGU_GACCACU_GCGCAAUCUGAGUUCUGGGAACCAGGUGAUGGAGUGUGUUCUGAGAACGGACUGAGGCCG
......................((..((..(((((.((((...)))))))))..)).)).......................... ( -0.77 =  -0.66 +  -0.10)
 free energy of ensemble =  -2.80 kcal/mol
 frequency of mfe structure in ensemble 0.847613;
>SNORD74
GUG_CCCUGCCUCUGAUGAAGCCU_G_UGUUGGUAGGGACAUCUGAGAGUGU_UGAUGAAUGCCAACGGCUCUGAUGGCGGCGC
............................(((((((....((((...........))))..)))))))................. ( -3.37 =  -3.16 +  -0.22)
 free energy of ensemble =  -3.95 kcal/mol
 frequency of mfe structure in ensemble 0.958617;
>snoZ6
UGCUGGUGAUGAAGCUGCCUCUCUCCGAGCACUGGGCCUUGCCUGGGGGCUCUCGGGAGCCAGGGGAGAUGCUACCACGGAAGCUGAAACG
.(((........(((..((((.((((((((.((((((...))))))..))))...))))...))))....)))........)))....... (-20.52 = -20.69 +   0.17)
 free energy of ensemble = -21.74 kcal/mol
 frequency of mfe structure in ensemble 0.754194;
>SCARNA8
UGGGAGGCUGAUACACAAAUUGGGCUGAA__GUACUGCUCUAAUUGUCACUAGACCUCCCUAGAAUAA___A_C_UGCCUUUUGAUGACCGGGACGAAUUGAGUGAAAUCGUAACGGACAGAUACGGGGCAGACAGUU
.((((((........(((...((((...........))))...)))........)))))).............(.((((((....((.(((..((((...........))))..))).)).....)))))))...... (-27.96 = -25.55 +  -2.41)
 free energy of ensemble = -29.34 kcal/mol
 frequency of mfe structure in ensemble 0.902864;
>SNORD44
CCUGGAUGAUGAUAA_GCAAAUA_CUGACUGAAC_AUGAAGGUCUUAAUUAGCUCUAACUGA_UU
..............(.((........((((..........)))).......)))........... (  5.97 =   5.30 +   0.67)
 free energy of ensemble =   4.15 kcal/mol
 frequency of mfe structure in ensemble 0.781376;
>snoZ30
AUGCAAUGAUGAGUG_AAGU_AUAGUCUGACCUGGUAUUGCCA_UUGCU_UC___AGUGU___UGGCUUUGACCAGGGUAUGAU__CC____C___UUAAUCUUCUCUCUGAGCUG
..((......(((.(.(((.......(...((((((...((((....................))))....))))))....)...................)))).)))...)).. (-11.64 = -11.33 +  -0.31)
 free energy of ensemble = -13.58 kcal/mol
 frequency of mfe structure in ensemble 0.854234;
>SNORND104
GCGGUGAUGACAUUCCAAUU_AAA_GCACGUGUUAGACUGCUGACGCGGGUGAUGCGAACUGGAGUCUGAGC
.....(((.................((.((((((((....)))))))).)).............)))..... ( -3.26 =  -3.47 +   0.21)
 free energy of ensemble =  -4.46 kcal/mol
 frequency of mfe structure in ensemble 0.897441;
>BaMV_CRE
AACGUUGCAUGAUCGUAAAACAUGCCCGGCUUACCGUGAGCCGCCUUUGAAAGAAAGGUUUACACGGACUCUGUUGCGUUACGCACGUACCUAACCCGUGCCAGCAGAAUAAAGACCUUUUGGUUUCUACAGUUUUUUCC
..((..(((((.........))))).)).....(((((....((((((.....))))))...)))))..(((((((......(((((.........))))))))))))....(((((....))))).............. (-29.26 = -28.94 +  -0.32)
 free energy of ensemble = -31.46 kcal/mol
 frequency of mfe structure in ensemble 0.489866;
>snoR639
ACCCCAUGAUAUUAAGCCGGCAGAUGCCUGCAAUCCCCAC__G__G__GCACCUGUGACUAUGAUUGGGAACAGUAAAGCUGCUGAUGUGUGUAUGUUGGG_CAGCGC___UCUUAUCCUGCGCGCUCGACAAAGA_AUUUUCAGUCGACA
..((((.............(((((((((((.........)..)..)..)))))))).........))))..(((((....))))).........(((((((.(.((((............))))))))))))................... (-28.98 = -26.82 +  -2.15)
 free energy of ensemble = -31.53 kcal/mol
 frequency of mfe structure in ensemble 0.630502;
>snoTBR5
GACAUGAUCGACACCUAGGCCGAUGUAAAGCCGUCGCAGAUGGACGUUGA_UGGCGCA_GCCGUGAAAACAACCC______ACGCCCCGUCUGAUC
.....(((((((.....(((((((((....(((((...))))))))))).....(((.....)))..................)))..))).)))) ( -5.36 =  -5.62 +   0.25)
 free energy of ensemble =  -7.15 kcal/mol
 frequency of mfe structure in ensemble 0.617645;
>snoM1
AAUUCAAUGAUUUCAACUUCACUGCUGACCAGCCACGCCUCACCGCCUCGGAGGGAUUGC____CCCCAUUCCCUGACAAAUAGAGCAUAUUCUAAUU_AACAC
.......(((........)))..(((....)))...((....((.(....).))....))............................................ (  3.46 =   3.80 +  -0.34)
 free energy of ensemble =   1.01 kcal/mol
 frequency of mfe structure in ensemble 0.567871;
>snoTBR17
UGCUCUC____AGCGCACAUGACGCACCGCCGC___CCGCGGAUCCCGUUACGCAUAUCCUGUGUGCGCUCCAGCCCCG_UCGGGGCCAUGACGAG______UCAGCAA__CAAACCAUGCAUUACACAUUGCC
............(((....((((((..........................(((((((...)))))))((((((((((....)))))..))..))).......................)))))).....))). (-11.51 =  -9.82 +  -1.69)
 free energy of ensemble = -13.67 kcal/mol
 frequency of mfe structure in ensemble 0.557063;
>snoTBR7
CAUAUGAUGAUUGA_CG__UAACAUCACAGACUUUGACGA_CCCGUGAGCAAGAAACAAUGUCGC__CCCAGUCUGACGU
....(((((.............)))))((((((.....................................)))))).... (  0.47 =   0.24 +   0.23)
 free energy of ensemble =  -0.36 kcal/mol
 frequency of mfe structure in ensemble 0.874486;
>snoR16
GUUGGCAAAUGAUGAGA___ACAAUCUUAUCCUA_CACAC____UGAAUGUAU____AUGUGUGGACAAACA_UCUCCGCUUAUUAUCUGAUGCCAUU
..(((((...((..........................................................................))...))))).. (  2.80 =   2.78 +   0.02)
 free energy of ensemble =   2.04 kcal/mol
 frequency of mfe structure in ensemble 0.9339;
>snoZ221_snoR21b
G___G_GC_GGUGAUG____A_____UGGAAAUAGUCAUGCACCACUCUGAA__CUCGG________________CUGUU__CGUGCUGACAAACA_____CUUCCUACCCAUUAUCAAUCUGA____GCC___C
..................................((((.(((..........................................)))))))............................................ (  5.40 =   5.31 +   0.08)
 free energy of ensemble =   4.96 kcal/mol
 frequency of mfe structure in ensemble 0.942354;
>snoZ256
ACCUGCUGGUCAUGCUGACCACAGCCGCCCGAGCAUGGCUGACAGGGCUACCGAGGUACACCAUCAACAGCUGGUCCGAACUGAAGGGACAGUU
.((((.((((((((((...............)))))))))).))))(((.((..(((..((((........))))....)))...))...))). (-14.98 = -13.90 +  -1.08)
 free energy of ensemble = -17.15 kcal/mol
 frequency of mfe structure in ensemble 0.494528;
>SNORA65
CCCGCCACUGCACCUGACCAG_UAU__UGUUGGC_UG_GUGCAAUCCAGUGGUGAGCUGACAGUGAGCCC_AGCUU__AGGAAACAGGGCUGUCCUACA_U_GUGGAUGACUCUGUGCCGAAAGCAUGGGAACAGCC
....((.(((.......((.(.(.........))..).).......))).))...............(((.(((.....((..(((((.((((((.........)))))).))))).))....)).))))....... ( -8.51 =  -7.62 +  -0.89)
 free energy of ensemble = -10.46 kcal/mol
 frequency of mfe structure in ensemble 0.798023;
>snoR86
GAGCAAAGGCGUC__AAA___AA____AAAUGGC_GUAAUUUGCAUUGAAGGUUGGCAAUAACAAAUA________GCGAUUCUCCGUGCCUAUCAAAUUUUCUUAUUUUUAUUGAU____GGCCUCGAACAAGUCGCUACAUU
..(((((.(((((..................))).))..))))).......((((....)))).............((((((...((.(((..............................)))..))....))))))...... (-14.55 = -13.19 +  -1.36)
 free energy of ensemble = -15.83 kcal/mol
 frequency of mfe structure in ensemble 0.828272;
>snoZ279_R105_R108
GGG_AUAUGAUGAGUGG_UA__AAAUCUCGCAAAUUA_UAAUGCGAGAUGGG_UG_UCCGCCCCAACC____CCU_GUUACGACA_AU_UGGG_C_A__CUCCAUUAUUU_UACCA_UCUGAUCCC
((........................(((((...........)))))..(((.((.(((...............................))).).)..)))................))(....) ( -8.72 =  -7.05 +  -1.67)
 free energy of ensemble =  -9.41 kcal/mol
 frequency of mfe structure in ensemble 0.945896;
>snoZ248
GCAGCGCCGUGAUGACCUUGUGGAACGACGCCGGCGAGAGGGCCGCGAGCUCCGCCGUCCACCACUCGGGCGGCGACCUCGUCGGGAACAGCACCUCGUUGCAGAUCCUGAGCGCGAUAGCGUCAGCUGAUCGCUGC
.(((.((.(((((((....(((........((((((((.((((.....))))((((((((.......))))))))..))))))))......))).))))))).).).))).((((((((((....))).))))).)) (-49.48 = -49.16 +  -0.32)
 free energy of ensemble = -51.73 kcal/mol
 frequency of mfe structure in ensemble 0.482209;
>snoZ178
GGAGGAGACUGAUGAUGGAACCGUCUGACACGCCGGCCCCCGCCGGCGCCGACGGUGCCUCCAAGGUCGACCCUCCAGCUCGUCUCUCCCCGUCGUCACCUACCUCUCUCUGUCACUCGCUCGCUCACUCACUCUUGCGCCUGAUUUGCUUC
(((((((..(((((((((.((((((.(...(((((((....))))))).)))))))((((...)))).(((..........))).....))))))))).)).)))))....((((..(((................)))..))))....... (-43.86 = -44.06 +   0.20)
 free energy of ensemble = -46.24 kcal/mol
 frequency of mfe structure in ensemble 0.462231;
>snoR98
GUUUAAUAGAU_AACCAUAU_UGCC__UAUA___UCUCUCCGCACAUCAAAUAAGGCAGAUAUUAAUGCUUGUGUUCCUCUCUAUAUGGA_CUUCAAGUUUGGCUAUCCUGUCACAUUU
.............................................(((..........)))......(((((...(((.........)))....))))).((((......))))..... ( -1.45 =  -0.95 +  -0.50)
 free energy of ensemble =  -3.64 kcal/mol
 frequency of mfe structure in ensemble 0.410889;
>snosnR60_Z15
__GGGUCA___AUGAUGAU________AA_AAUGCAUAGUUCA_ACUGAUUAA__________UUUAUGAAGAUUA__AUU__CAUC____AUAGUCUUUCGCUCCUAUCUGA___UGACUCU_
...(((((............................................................................................................)))))... (  6.52 =   7.32 +  -0.80)
 free energy of ensemble =   5.17 kcal/mol
 frequency of mfe structure in ensemble 0.909423;
>snoZ165
ACCAUUCUAUGAUGAAUUGUCCUUAGUGGAUUCUGAUGAACCUGAUGUCAUUUUGGUUCAAUGAGAACAUGCUAUGACAUGUCUGAGACAAU
.....(((..((((...((((..(((((..((((.(((((((.((......)).))))).)).))))..))))).))))))))..))).... (-13.92 = -14.88 +   0.96)
 free energy of ensemble = -16.05 kcal/mol
 frequency of mfe structure in ensemble 0.500404;
>snoZ188
GCGUGCUAGUGAUGAUUAAAGAGCU___AAAAAUGGUGAAUUCUGGAUGAAUG_UGCUCGCGUGCCGCUGGGUGCGCG_GC_AGCAGUGGUGAUAUGCAUCCUUACGCAGUUCAU__CUGAGGCACGC
....((((.........................))))......................((((((......)))))).................................(((......)))...... (  1.44 =   1.76 +  -0.32)
 free energy of ensemble =  -1.34 kcal/mol
 frequency of mfe structure in ensemble 0.807004;
>snoZ206
GCAGC_C_GGAUGAUGAGGUCAAGGUGAACGUGACGGUGCGCCGGUCGACGGCGCUGCUGGGCGGCACCGGCGCAGU___GCAAGAAGGCGGGCCUCAGGUGGUCGACGGGGUGAUGUGGUUCCGACCGGCGGC_
...((.(.((..(((.(.((((.((((.((......)).)))).((((((.((.(((..((((..((((..(((......)))....)))).))))))))).))))))....)))).).)))....))))).... (-38.81 = -39.28 +   0.47)
 free energy of ensemble = -41.03 kcal/mol
 frequency of mfe structure in ensemble 0.548075;
>snoZ173
GCAGCGCCGAUGAUGAGUUCACAAAUGUACUAGGUUGAAUUCUGAUCGAAGAACCUCUCUUGGUUCGAACGAUGACCACCUGUGUUCCUCUCGAUCUGAGGCGCUGC
..((((((...((((((..((((...((....((((........((((..(((((......)))))...)))))))))).)))).....))).)))...)))))).. (-24.83 = -24.58 +  -0.25)
 free energy of ensemble = -26.86 kcal/mol
 frequency of mfe structure in ensemble 0.437286;
>snoZ182
ACUGUGCCUAUGAUGAA_UGUUGA_ACCUGUGUCAGGAUUUGAACCACUGGGCAUGUAAAUCUCACUAGGUUUUUU____CUGAGGCAUAUU
..(((((((..(..............((((...))))....(((((..((((.((....))))))...))))).......)..))))))).. (-10.40 = -10.32 +  -0.08)
 free energy of ensemble = -12.10 kcal/mol
 frequency of mfe structure in ensemble 0.631785;
>snoJ33
CUGUGAGGGGAAUGAUGUACUACUACCGAGCUCUCAAGAUGCUGGCUUUUCUUGAUUCUGCAUCUGAAAUGGACAUUACAG
((.....))...((((((.(((((.((((((..((((((..........))))))....)).)))).)))))))))))... ( -4.36 =  -5.76 +   1.40)
 free energy of ensemble =  -5.45 kcal/mol
 frequency of mfe structure in ensemble 0.701085;
>snoR43
AGA_UGAUGAUGAUUCUAUACUUGAUAUUACAGACCAGUUACUAGCUGAAGACAAUCGCAUGCUGCCUGAGUCU
...........(((((......((((.........((((.....))))......))))..........))))). (  2.94 =   3.17 +  -0.23)
 free energy of ensemble =   0.59 kcal/mol
 frequency of mfe structure in ensemble 0.78797;
>snoZ163
UGGCCGGUGAUG_GAUGAAACCUGAGUUGUACAGACACUCUUAUGAAA_UUGAAUGAAGUGCAGUGA_ACACAC____AUUGCCUCUCUGAGGCCA
..(((...((.............((((.((....))))))....................((...................))...))...))).. (  0.71 =   0.67 +   0.04)
 free energy of ensemble =  -1.44 kcal/mol
 frequency of mfe structure in ensemble 0.607461;
>snoZ175
GCGGCAAUGAUGAGAAUGCAAUUCUAUGAUGUACUUUGAUUUUUCUAUGAUGUACUUUAAUUCUAUGAUACUCUGAGCCAU
..(((......(((....((..........((((..(.((......)).).))))..........))...)))...))).. (  0.65 =   0.32 +   0.33)
 free energy of ensemble =  -2.48 kcal/mol
 frequency of mfe structure in ensemble 0.428884;
>snoZ185
UGGCCACAUGAUGUUUGUAUCACCACCCAUCUGAAGCAGUCUGAAUGUCAGUCUGCAUGUGCAGAAAUGUGAUAUUCUGAUGGCUA
..((((...((......((((((......((((..((((.((((...)))).)))).....))))...)))))).))...)))).. (-12.34 = -12.54 +   0.20)
 free energy of ensemble = -14.36 kcal/mol
 frequency of mfe structure in ensemble 0.518516;
>snoZ247
GCCCUUGA__UGAUGAUGAUCUGAUCUCCCAUAUCCUUGCUGGUUUGGAUUUUGAUUAUAAUC_CUGUUGUGUCCUCGAUUAC_GGGACGCACUGAGUCUGUUUCCUUUGGUGAAGUCUAUGCGCAACUGCUGAGUUUCGAGC
...(((((...(((.((((((.(((((.(((.........)))...)))))..)))))).)))......(((((((........)))))))((((((.........))))))...........((....))......))))). (-15.13 = -14.48 +  -0.65)
 free energy of ensemble = -18.22 kcal/mol
 frequency of mfe structure in ensemble 0.533999;
>SNORA31
CUGCAUCCACUGAUAGACCUUGAACAGUUUGUGGUUGUUCUUCUGGUUUGCACUAGGAUGCAAAAGGAAAA_CUCCCUGCGCUUUCUGCCUGCCUUUGUGGCAGUUCAGAUUGAAUUGGGGAAUACAUCU
.(((((((.....((((((..((((((.......))))))....)))))).....)))))))..(((......((((((.....((((.(((((.....)))))..))))......)))))).....))) (-20.18 = -22.70 +   2.52)
 free energy of ensemble = -22.45 kcal/mol
 frequency of mfe structure in ensemble 0.478887;
>snoR79
GAAGGUGAUGAUGAUAAAGAUGAACGCUUGGGAACUUCGACUGACAGUGAGAACACUGAACUUUC
(.((((...........................)))))((..(.(((((....)))))..)..)) ( -3.06 =  -3.26 +   0.20)
 free energy of ensemble =  -4.61 kcal/mol
 frequency of mfe structure in ensemble 0.605243;
>snoMBII-202
UGAUGA___CAUUC_UCCGGAAUCGCUGUACUGCCU_U_GAUGAAAGUACAUUUGAACCCUUUUCCAU_____CUGAUGA__CUGAGG________CUUU___UCAUC
............................................................................................................ (  6.76 =   6.76 +   0.00)
 free energy of ensemble =   6.68 kcal/mol
 frequency of mfe structure in ensemble 0.995404;
>SNORD53_SNORD92
__G_UGCUGUGAUGAUAUCC_____AUAU__GGUUUCGCU__UCUGG__CUGA_GU_UU_C_AGUGAUGAC__AC_AU_U_UCUCUUGGCUG__UCUGAGCA_U__
..(.(((......(((..((...................................................................))..)..))...))).).. (  5.96 =   6.85 +  -0.89)
 free energy of ensemble =   4.51 kcal/mol
 frequency of mfe structure in ensemble 0.938559;
>snoZ155
AGUUGAUGGGAUGAUAAC_CUUUCACAGAAACUCU_____AUGUGUUGACCC_AAAAUUCAGACUACAAUUAUCUGAUCAACU
..((((...((((((.....................................................))))))...)))).. (  3.94 =   4.22 +  -0.28)
 free energy of ensemble =   2.34 kcal/mol
 frequency of mfe structure in ensemble 0.723523;
>snoZ194
AGCAGAUUGAUGAUGAAACAAUUUCUCCAAGCGUUUGUUACGCUGACAUCCAUAUAUGAUGGAGGGCUAUGUUACCAUAGCCUUCAUAGUUUUCAAUCUGAACCAUCU
..((((((((..((((.............(((((.....)))))....(((((.....)))))((((((((....)))))))))))).....))))))))........ (-25.62 = -25.62 +   0.00)
 free energy of ensemble = -27.76 kcal/mol
 frequency of mfe structure in ensemble 0.498784;
>snoZ161_228
GGGCCAAGUGAUGAGAAUAGAUAAAUAA_U_CUCACGACGGUCGUCUGAGACACUUC___GUGU____AAUGUUG_AGACAUAU_AU___UCUCUGAUGCCC
............(((.......................(((....))).(((((......)))))..........................)))........ (  5.20 =   5.82 +  -0.62)
 free energy of ensemble =   4.20 kcal/mol
 frequency of mfe structure in ensemble 0.862503;
>snoZ162
UUUGGCACAAUGAGGAGCUAAUUUUGCUAAUGUAUCUCUGAGGUCAGAAGGCCAAUGACUCAUA_____UGUCCUUUUCAUUCUGAGUGCCUU
...(((((((((((((.........................((((....))))...(((...........))).))))))))....))))).. (-11.70 = -10.53 +  -1.17)
 free energy of ensemble = -12.49 kcal/mol
 frequency of mfe structure in ensemble 0.868347;
>snoZ43
GGACAGUGACGAUUGAUAUGAAAGGUCUCGUUCGUCGU___AAUGG___UAAAUU___UUUGCCUUGCCGACCAUUCUGUUAUAUCACCACCCAUAUUCUGAGUCC
(((...((((((...................))))))......(((...(((............))))))...........................)))(....) ( -0.61 =  -0.14 +  -0.46)
 free energy of ensemble =  -2.96 kcal/mol
 frequency of mfe structure in ensemble 0.579812;
>snoZ169
GUGGCUAUGAUGAGGAAAA_GAUUCAAUGAUGUAUUAUGAUUA_CUCACACAUCGCAAUGCUCUGAGCCAC
..((((.....(((......(((....(((.(((.......)).))))...)))......)))..)))).. ( -1.33 =  -1.33 +   0.00)
 free energy of ensemble =  -2.86 kcal/mol
 frequency of mfe structure in ensemble 0.438127;
>snoZ266
AAUUGGCAGGAAUGAUGAAUCAAUUAGAUGUGUGAA________GUUACCUUA________UGAGCUCAAACUUUUGA___GGCAUACAUU_CUGUCUGACUUGCCAAUC
..((((((((..(((....))).((((((((((.................................................))))........)))))))))))))).. ( -6.64 =  -5.74 +  -0.91)
 free energy of ensemble =  -8.32 kcal/mol
 frequency of mfe structure in ensemble 0.780732;
>snoZ157
_UGGAAGUGGUGAUGA_GA_CAAUUUUUAUGUGGACUAGAGUUUCUGAUACUGC_UACUUC_GUGGU_AGUUGAAGACUAAACCCUU_GGCUGUCUGAGCUUC_A_
..((((((...((((.....(((.........((.......((((...((((((........))))).)...)))).......)))).)..))))...)))))).. (-10.21 =  -7.09 +  -3.12)
 free energy of ensemble = -11.48 kcal/mol
 frequency of mfe structure in ensemble 0.813791;
>SNORA3
GCCGAGGCUAGAGUCACACCCUGACA_CGGCUCUUGCCCUAGUGUGCUAGAGUCCUCGAAGAGAAACUGCUGACCUU_AUUCACUGGCUGGG_GCACUCAGUGGCACAGUCAGUCACCAGAUCAGAAACAUAC
..(((((((..((.((((((..((((........))))..))))))))..))).))))...........(((((((......((((((((((............))))))))))....)))))))........ (-35.25 = -32.03 +  -3.22)
 free energy of ensemble = -36.03 kcal/mol
 frequency of mfe structure in ensemble 0.809512;
>snoZ13_snr52
CUUGU_UCACAUGAUGAAAUA_UU__UCGGAUGUAAA____AUCACA_____GACC_____________UGU_CCGAAA_GCGCAA__A___A___C_C__GUGUGGAGAU_U_UCCG__UUGCCUUCCUUCUGAU_UA_____UCAU
............((.............((((...................................................................................))))............))................ (  5.16 =   5.20 +  -0.04)
 free energy of ensemble =   4.49 kcal/mol
 frequency of mfe structure in ensemble 0.974432;
>snoJ26
UGGAAAAAA_CAACACAGUGGGUAAGUUAGGAGAAGGUGACUUUUUCUCUUUUUCUGAA_____GGUUGGAGCUCUGCCCAUUAUAUUAAGAAGUUGGUUUCAGACUACAAUUCAAGGAUAUUACAUGGAACAAAAAGCAACUGAGCUUUCAC
((.............))((((.....(((((((((((.((.....)))))))))))))...........(((((((((((((.(((((....(((((...........)))))....)))))...))))........)))...)))))))))) (-16.76 = -17.72 +   0.96)
 free energy of ensemble = -19.73 kcal/mol
 frequency of mfe structure in ensemble 0.380891;
>snoR53
UUUGAUGAUGAUUA_CACUCCAUGCUAAUCAUGAAUGUGUUCAA___UGUAAAU_UUGAAUACGAUGAUUAAAAUUGUUGUUUACGCUUUCUGAAA
................((..((...(((((((...(((((((((...........))))))))))))))))....))..))............... ( -5.91 =  -5.11 +  -0.80)
 free energy of ensemble =  -8.52 kcal/mol
 frequency of mfe structure in ensemble 0.429515;
>snoR60
AUGCAAAUGAUGAG_CUUACUCGGAUUCCCCUUCAGGACAUC_A__UGGGUGAUGCAAA_UUCGAGUUUCUGAUGCA
..(((...((........((((((........(((...((......))..)))........)))))).))...))). (  0.27 =   0.32 +  -0.05)
 free energy of ensemble =  -2.39 kcal/mol
 frequency of mfe structure in ensemble 0.64946;
>SNORA36
UUCCAAAGUGUUGAGUUCAGUCCAGGGCAGCUUCCCUGCUCUGUUAAUUAAACUUUGGAACAUUGAAACUGGCUAGGGAAAAUGACUGGAUAGAAAGCAUUAUUCUAUUCAUUUACUCCCCAGCCUACAAA_
(((((((((........(((..(((((......)))))..)))........)))))))))..........((((.((((...(((.(((((((((.......))))))))).))).)))).))))....... (-28.64 = -28.62 +  -0.02)
 free energy of ensemble = -30.38 kcal/mol
 frequency of mfe structure in ensemble 0.623823;
>snoZ39
GUACAUGUGAUGA_AGCAAAUCAGUAUGAAUAAA___AUGAUACUGUAAACGCUUUCUGAUGUA
..((((..((..(.(((....((((((.(.........).)))))).....))))))..)))). ( -4.20 =  -4.04 +  -0.16)
 free energy of ensemble =  -5.18 kcal/mol
 frequency of mfe structure in ensemble 0.727601;
>snoZ40
CGAUGUUAUGAUGAUGGGCAAAAUGUUCAACUGCUCUGAAUGGGCUGAAUGAAAAUAGCCUUUCUGAACAUCA
..(((((.....((.((((......((((...((((.....))))....))))....)))).))..))))).. ( -9.26 =  -9.26 +   0.00)
 free energy of ensemble = -11.04 kcal/mol
 frequency of mfe structure in ensemble 0.56064;
>snoZ122
UUUGGGAAAUGAUGA_AAAUUCAUUUCAG________________AUAUCUUUAAGGC___ACUAGCUGUCC____GAAUGAUUAAUAUUUGCACGUCAGUCUGAUCCCAAA
...((((..(((((................................................................................)))))......))))... (  0.45 =   0.99 +  -0.54)
 free energy of ensemble =   0.06 kcal/mol
 frequency of mfe structure in ensemble 0.973209;
>snoZ267
AAAAUGCCUGUGAUGGUGUUAAAUAUACUUUGAGCAAUGCG___CUAUGAAAAAUAAUUAAAAUCUGAGGCAAUUU
..(((((((..((((((((.....)))))...((((...))...))................)))..))))))).. ( -3.10 =  -4.00 +   0.90)
 free energy of ensemble =  -4.96 kcal/mol
 frequency of mfe structure in ensemble 0.54764;
>snoR1
GGCUGUGAUGAGCAGUGCU___UUACUUCUGACACCUCUUGUAUGAGAAGAGCUUG___UGAC_______CUCUUCUUUGAGCACAUU_UAGCAACUCU___CUGAGCC
...........................((..(((.....)))..))((((......................)))).....((........))................ (  4.72 =   4.60 +   0.12)
 free energy of ensemble =   3.17 kcal/mol
 frequency of mfe structure in ensemble 0.823918;
>snoR9_plant
AUGAAUGAGGAAAACGAUGAUUAGAUAGAAGUUUCGGUGAUGUUGUAACGCUCAGGCGUUAAACACAGUCAGGGAAGACGAGUUAAAGAAGCAAGGGACGUUUCGUAUUUCCAUUGAUGAUGCUGACAU
(((.......................(((.(((((.((....((((....(((.(((..........))).)))...)))).........))..))))).))))))((.((((((...))))..)).)) ( -3.10 =  -1.57 +  -1.52)
 free energy of ensemble =  -4.65 kcal/mol
 frequency of mfe structure in ensemble 0.697495;
>snoR11
AAGCUUAUGAUGAUAAAAA_C___AAUUAUCUUAGCGGAUUUCAGUGAGGUUUUUC___AAUCAAUGAUC__UGAAU_UUGUUACACACACUGAAGCUU
..(((...((((((...........))))))..)))((.((((((((.(((..........(((........)))........)).).)))))))))). ( -7.26 =  -8.34 +   1.08)
 free energy of ensemble =  -9.30 kcal/mol
 frequency of mfe structure in ensemble 0.516225;
>snoZ152
__GAUGCAAUGAUGAGAUAA_AGCACG__AAGAGUGUGAGAAGGGCAGUGGACA_________________________UUUUGCCGUGAGCUUUCUUU__AA_AAACGACUUCUCCUUCCACUGAGCAUU__
..(((((..................................(((((...((.................................))....))))).................((..........))))))).. (  1.79 =   2.32 +  -0.53)
 free energy of ensemble =  -1.04 kcal/mol
 frequency of mfe structure in ensemble 0.60029;
>snoR20
AAGGAUGAU____GAAUACAAUUG____GUACAUAAAAUUAGUUGUGA__AACUCACAUGUUGAAAAAAGUAGAAUAC__CGAUGAAUAUCAAAGCUGACUU
.((.....(....((.....((((....((((((((......)))))...(((......))).............)))..)))).....)))...))..... (  5.28 =   4.65 +   0.63)
 free energy of ensemble =   2.33 kcal/mol
 frequency of mfe structure in ensemble 0.302819;
>snoR21
_AUCCCAAUGAUGAAUGAU_AUGAU_AAAAAUGUUAAAAGUAGUGA_CUGAU_AUCCAUUGAUGACUAGU___CAAUUCUGAGGGAUU
..((((...((..................................................................))...)))).. (  3.24 =   3.24 +   0.00)
 free energy of ensemble =   1.46 kcal/mol
 frequency of mfe structure in ensemble 0.617502;
>snoR31_Z110_Z27
AGGAAGAAAG__GAUGA_AA_CAUCAAACAA__AUCUUAGGACACCUUCUGACACAGAUU________CUGUGAAUGAGAAGG_CAUUUCAUU_CUGAUGAUCCG
..((((...............................................(((.............)))..((.((((((......)))).)).)))))).. (  2.49 =   5.11 +  -2.62)
 free energy of ensemble =   0.78 kcal/mol
 frequency of mfe structure in ensemble 0.706451;
>snoR28
GAU__AGGAGAUGAUGUGUUCUUGUGUGAGUAUGAGUAUGAUAUUCAUUGGCAUAGUUUUAAGCGUUUGGCUGA_AUU
..............(((((((......)))))))..((((.((.....)).)))).......((.....))....... (  3.81 =   4.87 +  -1.06)
 free energy of ensemble =   1.62 kcal/mol
 frequency of mfe structure in ensemble 0.674841;
>snoR32_R81
UGAAGAAUAUGAUGAAAG______UUGUA___UAUCGGUGAUGAU_______CUUUUGAUUCAUAUGAUCGACAAAAAUUUCAACUCGCUACGUUCUUUCUGAUUCUUCA
...(((((.....(((((.......((((.........(((..............((((((.....))))))........)))......))))..)))))..)))))... ( -0.76 =  -1.60 +   0.84)
 free energy of ensemble =  -2.32 kcal/mol
 frequency of mfe structure in ensemble 0.656704;
>snoR44_J54
UGUGCAAGUGAUGA_AAACAAGACAGGGACAUCAGCAACUCCUUUG_________GAGAG_GG___GAAUGAU___GACUAAUGUCUA_AAUGGGAAUCUCUCUGAUGCAUA
..((((......................................................................(((....)))......((((...))))...)))).. (  2.54 =   2.74 +  -0.21)
 free energy of ensemble =   1.36 kcal/mol
 frequency of mfe structure in ensemble 0.936037;
>snoZ101
AUGGGGCAGAUGAUGAAUCUCA___UGAUUUAA_UGGGUAAUUUGCGUCUGAA_UUAUUUCUUUGAUGU_A____CUUUAUCACCUUGGAGAACUGAUGCCCCUA
..((((((...(.......................((((......((((...............))))..............)))).......)...)))))).. ( -3.34 =  -1.96 +  -1.38)
 free energy of ensemble =  -5.02 kcal/mol
 frequency of mfe structure in ensemble 0.810461;
>snoZ102_R77
GGAUGAUAUGAUGAUC_AAAUUUGUU_UCCCUAUUGGUUUGAU_UGGCCGCUAUGAUGGCAUCAAAU_UGUAUUAGCUCUAUCUGAUCAUCC
.........(((((((.(...........((....))........(((((......)))))......................)))))))). ( -6.27 =  -6.00 +  -0.27)
 free energy of ensemble =  -8.22 kcal/mol
 frequency of mfe structure in ensemble 0.703407;
>snoZ107_R87
____GAUGGCAGUGACGACUUGGUAAUAUU_CAAGCUCAACAGACCAAAUCACAGGUCUU__UCUCUCUGGCUC___UCCUCUGGGAUUGAUUUG__UAUGCCGAUUUUCCCGCUGAACCGAGCCAUC____
...(((((((((((......((((...................)))).....((((((....((((.................))))..))))))................)))).......)))))))... ( -5.90 =  -4.79 +  -1.11)
 free energy of ensemble =  -8.36 kcal/mol
 frequency of mfe structure in ensemble 0.641616;
>snoZ119
UUUUGGAGAUGAUGAUUUAUAUCAGAGGCUGUUUCUGAGGACGAGCCAAGAGCUCACCCAGUGCUGCAAA_GAACUGAUUUGCCGUUCUGAUCCAAAA
..(((((.((((....)))).((((((.....))))))((..((((.....)))).))(((.((.(((((........))))).)).))).))))).. (-17.53 = -17.03 +  -0.50)
 free energy of ensemble = -19.30 kcal/mol
 frequency of mfe structure in ensemble 0.619955;
>Pospi_RY
GGCC_GACAGGAGUAAUUCCCGCCGAAACAGGGUUUUCACCCUUCCUUUCUUCGGGUGUCCUUCCUC_GCGCCCGCAGGAC
...(.((..((((.....((((..((((.(((((....)))))...))))..)))).....)))))).).(((....)).) (-13.59 = -12.97 +  -0.62)
 free energy of ensemble = -15.50 kcal/mol
 frequency of mfe structure in ensemble 0.823614;
>mir-BART1
GGGGGUCUUAGUGGAAGUGACGUGCUGUGAAUACAGGUCCAUAGCACCGCUAUCCACUAUGUCUCGCCCG
(.(((.(.(((((((((((..((((((((..........)))))))))))).))))))).).))).)... (-22.24 = -22.08 +  -0.16)
 free energy of ensemble = -23.56 kcal/mol
 frequency of mfe structure in ensemble 0.651863;
>mir-BART2
__UAAUAUUUUUAUUCGCCCUUGCGUGUCCAUUGUUGCAAGGAGCGAUUUGGAGAAAAUAAA
.......((((((.(((((((((((..........))))))).))))..))))))....... (-10.25 = -10.55 +   0.30)
 free energy of ensemble = -10.79 kcal/mol
 frequency of mfe structure in ensemble 0.896387;
>mir-BHRF1-1
UAUUAACCUGAUCAG_CCCCGGAGUUGCCUGUUUCAUCACUAACCCCGGGCCUGAAGAGGUUGACAA
..(((((((..((((..(((((.((((..((......)).)))).))))).))))..)))))))... (-19.66 = -18.82 +  -0.84)
 free energy of ensemble = -20.21 kcal/mol
 frequency of mfe structure in ensemble 0.837247;
>mir-BHRF1-2
CUUUUAAAUUCUGCCGCAGCAGAUAGCUGAUACUCAAUGUUAUCUUUUGCGGCAGAAUUUGAAAG
..(((((((((((((((((.(((((((...........))))))).))))))))))))))))).. (-21.22 = -21.02 +  -0.20)
 free energy of ensemble = -21.85 kcal/mol
 frequency of mfe structure in ensemble 0.816232;
>mir-BHRF1-3
UCUAACGGGAAGUGUGUAAGCACACACGUAAUUUGCAAGCGGUGCUUCACGCUCUUCGUUAAAAU
..(((((((.((((((.((((((...(((.........))))))))))))))).))))))).... (-17.40 = -17.40 +   0.00)
 free energy of ensemble = -18.51 kcal/mol
 frequency of mfe structure in ensemble 0.636973;
>sroB
CCA___CCGAGGGU_UGAACGCUUGGUAUAAUAA___AAAAAUGAAA__UUCCUCUUUGACGGGCCAAUAGCGAUAUUGGCCAUUUUUUU
........((((((....))))))..........................((......))..((((((((....))))))))........ ( -9.58 =  -7.66 +  -1.93)
 free energy of ensemble = -10.59 kcal/mol
 frequency of mfe structure in ensemble 0.903045;
>sroC
ACUAACUAAAACAAAAAGGGGCGGGA_CUCCUGCCCUCUCGAUUGUCGC_UCAGCACGGACAGACUAUAAGCCUGAUGGUCGUUCCCCAUCGGGCCUGAAA_CCGCAAAACGCCGGGCAACAAUCUUCGAGGGUAGCGCUGCUACCCUUUUUUUUCGGAGUAGA
.................((((((((....))))))))...((((((.((.(((((..(......).....(((((((((.......)))))))))................))))))).))))))...(((((((((...)))))))))............... (-43.89 = -42.90 +  -0.99)
 free energy of ensemble = -45.71 kcal/mol
 frequency of mfe structure in ensemble 0.610509;
>sroD
UUACGUGACGAAGCGCGCGGCAAAGUGGACAAUAAAGCCUGAGCGUUAAGUCAGU___CGCC___AGACGCCGGUUAAGCCGGCGUUUUUUU
..((.((((..(((((..(((...............)))...)))))..))))))..........((((((((((...)))))))))).... (-17.58 = -19.18 +   1.60)
 free energy of ensemble = -19.29 kcal/mol
 frequency of mfe structure in ensemble 0.574517;
>sroE
AUAACGUGAUGGGAAGCGGCGCGCUUCCCGUGUAUGAUUGAACCCGCAUGGCUCCCGAAUCAUUCGGGGAAGCGCUGAGGGUUCAUUUUUAU
(((......(((((((((...))))))))))))((((.(((((((.((..((((((..........))).)))..)).)))))))...)))) (-30.25 = -29.50 +  -0.75)
 free energy of ensemble = -32.01 kcal/mol
 frequency of mfe structure in ensemble 0.489054;
>sroH
AAAAACAAGAACACAUGAUAACACAGUCAAGGAUGCAGCAGACUGAAG_AAUCCAGACAUCCCGCAACAAGCGAA___CGC_AGGUC_AGGCAAAGUCCGGUAAAGGCGCUCUGAAUACCAGAGAUAAU__UCUGGCGAAACCCACCUCAAGGUGGGUUUU
........................((((.((..((...))..)))))).....((((...((((((...))))......((..((.(........).)).))...))...))))....(((((........))))).((((((((((....)))))))))) (-28.35 = -26.60 +  -1.75)
 free energy of ensemble = -31.13 kcal/mol
 frequency of mfe structure in ensemble 0.104503;
>Gammaretro_CES
GUCUGUACUAGUUAGCUAACUAGCUCUGUAUCUGGCGGACCCGUGGUGGAACUGACGAGUUCGGAACACCCGGCCGCAACC_CUGGGAGACGUCCCAG_GGAC
.......((((((....))))))...........((((.((.(.(((((((((....)))))....)))))))))))..((.((((((....)))))).)).. (-31.00 = -29.25 +  -1.75)
 free energy of ensemble = -32.22 kcal/mol
 frequency of mfe structure in ensemble 0.913913;
>HIV_PBS
CUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGG__AAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAAAACCAGAG
..((.((..(((((((.................................)))))))........(((.....)))...................)).)).. ( -3.16 =  -3.07 +  -0.09)
 free energy of ensemble =  -4.60 kcal/mol
 frequency of mfe structure in ensemble 0.982139;
>HIV_GSL3
GGCCAGGGGGAAA_GAAAAAAUAUAGACUAAAACAUAUAGUAUGGGCAAGCAGGGAGCUAGAAAGAUUUGCACUUAACCCUGGCC
....((((.....................................................................)))).... (  4.44 =   4.61 +  -0.17)
 free energy of ensemble =   4.29 kcal/mol
 frequency of mfe structure in ensemble 0.996678;
>snoU6-53
CCCCAAUGAUGA_GU_U_GCCAUGCUAAUACUGAGACACCAGGUAGGGCAGUGUUGCCCUGGUUUGGGUGCCAGUGAGUUAAACAAAACUUCUCAUAUGGAG______ACCUGAGGGGC
......................................((((.(((((........)))))..)))).................................................... ( -2.93 =  -1.57 +  -1.36)
 free energy of ensemble =  -4.89 kcal/mol
 frequency of mfe structure in ensemble 0.880515;
>Qrr
UGACCC_UU__U_UAAGCCGAGGGUCA_CCUAGCCAACUGACGUUGUUAGUGAACA____UUA__UU__GUUCACAAAAAU_AUA_A_AGCCAAUCG_C___C_A__UA__UU__G_CGGUUGGCUUUUUUUUU
.(((((...............)))))........((((....))))...((((((..............))))))..............((((((((.(................).))))))))......... (-24.60 = -22.62 +  -1.98)
 free energy of ensemble = -25.52 kcal/mol
 frequency of mfe structure in ensemble 0.951606;
>Antizyme_FSE
UGAUGCCCCUCACCCACCCCUGAAGAUCCCAGGUGGGCGAGGGAACGGUCAGAGGGAUC
((...((((((.((((((...((...))...)))))).)))))).))(..........) (-15.99 = -15.64 +  -0.36)
 free energy of ensemble = -17.12 kcal/mol
 frequency of mfe structure in ensemble 0.868512;
>DnaX
CGCAGGGAGCAACCAAACCAAAAAAGAGUGAACCGGCAGCCGCUACCCGCGCGCGGCCGGUGAAU
....((......))....((........)).((((((.(((((.....))).)).)))))).... ( -9.98 = -10.58 +   0.60)
 free energy of ensemble = -11.30 kcal/mol
 frequency of mfe structure in ensemble 0.651547;
>IS1222_FSE
GGCGCUUCAGGUGGCUCUGGGGCGAAAGUACUGACGACAGACCAGAAGCGGGAAGCCGUGAUGUUGAUGUGUGAUGCGACCGGUCUGUCGCAACGUCGUGCCUGCAGGCUUACAGGUU
(((((((((((....))))))))........((.(((((((((.(..(((....(((((.......))).))..)))..).)))))))))))..)))(.(((((........)))))) (-30.70 = -31.58 +   0.88)
 free energy of ensemble = -32.60 kcal/mol
 frequency of mfe structure in ensemble 0.539753;
>Pox_AX_element
GAAUCUUUUCACAAAAGAUUUUAUCCGAUAAUUCUUCAUCGGACAAUUUCGGAUUUGAAUGC
(((((((((...))))))))).((((((....................))))))........ ( -1.85 =  -1.99 +   0.14)
 free energy of ensemble =  -3.87 kcal/mol
 frequency of mfe structure in ensemble 0.720381;
>IBV_D-RNA
GGAAGAUAGGCAUGUAGCUUGAUUACCUACAUGUCUAUCGCC
....(((((((((((((.........)))))))))))))... (-12.17 = -12.18 +   0.01)
 free energy of ensemble = -12.33 kcal/mol
 frequency of mfe structure in ensemble 0.973619;
>Entero_5_CRE
UUAAAACAGCCUGUGGGUUGUU_CCCACCCACAGGGCCCACUGGGC_GCUAGCACUCUGGUA________________UUACGG________________UACCUUUGUGCGCCUGUUUUAU_AC
.........(((((((............)))))))(((.....))).((..((((...((((......................................))))...))))))............ (-16.36 = -14.20 +  -2.16)
 free energy of ensemble = -16.95 kcal/mol
 frequency of mfe structure in ensemble 0.994017;
>IRES_FGF1
CGCUCCAGGGGA_UAAGGGCAUCGC____CGACUUUUCUGGAAGGACACUCCCUCCUAAUGGUGAAUGGAAACUCCCUUCCUC____AGCAGCCUCCCUGCAGCUC_UCCCGGUAGAACAGUGUG___AUUGCAGAAGCUGCCACCACCC_AGAAAGAAAGCACCCCAGAGC_
..(((..((((....((((.....(....((.((.....)).))).....))))(((...((((...(((((.....)))))......(((((....((((((..........................))))))..)))))...))))......))).....)))).))).. (-20.85 = -17.60 +  -3.25)
 free energy of ensemble = -24.46 kcal/mol
 frequency of mfe structure in ensemble 0.377;
>Anti-Q_RNA
GUUGUAACUAAUGUUGCAACAAACGA_________GAACCGAGUAUAGUUCAUGGGGU_AUCAUGAAUUGUUUAACUGUCCUCUAGGAUUCCC_GUCCUAUGGCAGUCGGUUC
((((((((....))))))))...............((((((...((((((((((.......))))))))))...((((((...((((((.....)))))).)))))))))))) (-20.25 = -21.03 +   0.78)
 free energy of ensemble = -21.48 kcal/mol
 frequency of mfe structure in ensemble 0.716722;
>satBaMV_CRE
GAAAACUCACCGCAACGAAACGAAACAAAUCGUUCAGAAAUACUUGACCACGAGGGGUCCCCUAUAGUCCGCGUUGGCGGUGCGGCAGCCCCCGUGCGAUAGGCUAACUGCGGUAUUCCCCGCACUCCGUCGAGCGGUUAAUACGACGCUUACCAAGAC
(.......(((((..(..(((((......)))))..)...........((((.(((((..........((........)).......)))))))))((((.((......((((......))))...)))))).)))))........)((((...))).) (-25.78 = -24.76 +  -1.03)
 free energy of ensemble = -28.75 kcal/mol
 frequency of mfe structure in ensemble 0.891689;
>UPSK
UAAGUUCUCGAUCUCUAAAAUCG
........((((.......)))) (  4.38 =   4.22 +   0.17)
 free energy of ensemble =   4.02 kcal/mol
 frequency of mfe structure in ensemble 0.90636;
>SNORA5
UG_CAGCCAUGUCAAAUUCAGUGCCUGCC_CUGUC_AUGGUAGGCACUGGCCCAGAAGGCUGCCACAG_AAACA_CUGUGACUCAUGGGCC_C_UGUUCCCCUGUCCCAGGCUCA_G_GGAUAAAUUUGGUUACAGACACCA
.(.(((((...((....(((((.((((((.........)))))).)))))....)).))))))............((((((((......(((((((..(((.......)))..)))))))........))))))))...... (-31.85 = -29.92 +  -1.94)
 free energy of ensemble = -34.00 kcal/mol
 frequency of mfe structure in ensemble 0.558982;
>SNORA8
UGCACUGC_AUGGUAUCUGCACUCAGCAGUUUACUCCUGCUAGGGUGUUCAAAGGUCAGUGCCAUAGAAAUUCAGUAUCUGGCAUCAUUGGUUUUCUUGGCUUUGUGCUUGUUAA_ACCUGGUAUUUCUAUUGAUACAGUA
(((...)).)(((((((.(((((((((((.......))))).))))))...(((..(((.((((.(((((.(((((..........))))).))))))))).)))..)))..........((((....)))))))))..)) (-25.72 = -25.08 +  -0.64)
 free energy of ensemble = -28.64 kcal/mol
 frequency of mfe structure in ensemble 0.387817;
>SNORA4
CUACCAAAAGUUAAUUUUU_UGG_GGGAAGGUUUU__UUAAAUAACCUUUACCAAUUUGGGCUAUUUGGGAGAAUAAAG__AAGACCACACUCCACAGUGGGCUAUACCACUUA_____GUAUAGUUCACUACUAUUUUGUGGCCUACAUU
...(((((((((...............((((((..........))))))..........)))).))))).............((.(((((......(((((((((((.............))))))))))).......))))).))..... (-10.35 = -11.70 +   1.35)
 free energy of ensemble = -12.34 kcal/mol
 frequency of mfe structure in ensemble 0.630413;
>SNORA13
AGCCUUU__GUGUUGCCCAUUCACUUUUGGAAACUAGUGAAUGUGGUGU_CAA__AAAAGGCAUAAAUUAAAC__G_CUUU___GCAGCCUU__UUCCUGCCC_UUGAAUUUGG_______UAUC_UUUGGUGUAGGA_______GCUGCAU___AAGUAACAGUU
..........(((((((((((((((..........)))))))).)))((.(........))).............(.(((.....(((........((.((((..........................)).)).)).........)))......))))))))... ( -7.09 =  -4.75 +  -2.34)
 free energy of ensemble =  -8.52 kcal/mol
 frequency of mfe structure in ensemble 0.954492;
>SNORA14
CUGCAUUC_UUAAACCCUCUUGGUAGCUUCGCUCUAAAUGCUUCCAAGAUA_UGAGUGAAUGCUAUAGA_AAUUGCAGGGGAGUCCAAAGGGCUGCGC_UU__C_UCCU_GUGGCUCAGCCUUAUUUCAUA__CCUGCGACA____UCU
..((((((.........((((((.(((............))).))))))........))))))..........((((((.........(((((((.((.(............))).)))))))..........)))))).......... (-30.83 = -28.78 +  -2.04)
 free energy of ensemble = -31.41 kcal/mol
 frequency of mfe structure in ensemble 0.948694;
>SNORA15
GCAUGGCUGAAUACUGUGUUC__U_UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGUAAAGUC__UUCCCUUUAAAAUGAC__UGAUGGUAUGCUA_AGU_UUUUUCA__U_AGCAUAUCA_UUAUUAAAAGUGAAUACAAAU
((((((.......((((((....................)))))).......))))))....................................(((((((((..............).))))))))...........((....)).... (-14.21 = -13.25 +  -0.96)
 free energy of ensemble = -15.72 kcal/mol
 frequency of mfe structure in ensemble 0.894639;
>SNORA24
CUCCAUGUAUCUUUGGGACCUGUCAGCUGUGGCAGUCUCCCUUCCUAGCCAUGGAAGAGCA____UAUUCUUGUUUAUUGGCAAAGCUGUCACCAUUUAAUUGGUAUCAGAUUCUGACUUGCACAAGUAACAUUC
.((((((.......((((.((((((....))))))..))))........)))))).(((..........(((((............(((..((((......))))..)))............))))).....))) (-18.92 = -20.52 +   1.60)
 free energy of ensemble = -21.80 kcal/mol
 frequency of mfe structure in ensemble 0.392866;
>SNORA28
AAGCAACACUCUGUGGCAGAUG_AUCAAAAC__UGUCUGACACAAUUU_GAGCUUGC_UAUA_GCAA______G_A_AAGUCUAACCUAUUCCGGU__GUUCUCUCUUCU_GUGAGACAA_GCC__GUUAUAUAGACUUAAACAGU
((((............((((((...........))))))............))))(......................(((((....(((..((((......((.........))......)))..)..))).))))).......) ( -5.92 =  -4.95 +  -0.97)
 free energy of ensemble =  -7.54 kcal/mol
 frequency of mfe structure in ensemble 0.903924;
>SNORA20
UUUCCCAUUAAUUUGCUGCUC_UAGUCUGUCAGUGAUAGGAGCGGUUAUACGCAUGGGAUAAAACAAUAUUGGGCCAUUGUACAUGGAGAUGAAAU__GUGUUUU_GUCUCUCGUACA_UGGUCUAGACAUUG
..((((((......(((((((...(((.......)))..))))))).......)))))).....((((.((((.(((.((((....((.(((((((....))))).)).))...)))).))).))))..)))) (-19.46 = -18.84 +  -0.62)
 free energy of ensemble = -22.17 kcal/mol
 frequency of mfe structure in ensemble 0.772194;
>SNORA25
AGGUCAUUUCAAAGAGGGCUUGUGGGGCUGUGAAACCAAGAGCUCUUAACGCUGUGACCAAAGAUUGAAGUUCUCUAUAGGAUGCC__AUA_G_CACU_____CAAU____AGUG__C_UAUGUUUUCCUGA___GGAGAUAUAAGA
..(((((......((((..........................))))......)))).)............(((((.(((((......(((.(.((((.............))))..).)))....)))))....)))))....... (-11.27 =  -9.90 +  -1.37)
 free energy of ensemble = -12.66 kcal/mol
 frequency of mfe structure in ensemble 0.927673;
>SNORA41
UUCCACAGCUACUGGUCUGCAGCUGUUCUUA_UGGUAGCAGUUGUGGCAUUCC_UCUGUGGGAAAGAAA_CUGUU_ACACAA__UUAAAU_ACCU_CUUUCUUAGCAAAACAGAAAGUGGG___CAUAUGUGUGACAGACACAA
..(((.......))).((((((((((...........))))))))))..((((......)))).............................(((.((((((.........)))))).)))....................... (-14.30 = -13.10 +  -1.20)
 free energy of ensemble = -16.07 kcal/mol
 frequency of mfe structure in ensemble 0.911581;
>SNORA46
AGCACUAUA_UUUAAACCUAUGGAUGGGAAU_UUUCCCCAUUCUUGGUUACGCUGUAGUGCAAAA_GAAUU_CCU__GGCUC__U___UUG__U_____UGCACAGCUGAC_U_U_G_UGCCAUUCUGCUGUUGCUU_UAUGGAGUUAAGGAACAUAA
.((((((((.....((((...((((((..........))))))..))))....))))))))........((.(((..(((((..(..................((((....................))))..........)))))).)))))..... (-25.28 = -24.26 +  -1.02)
 free energy of ensemble = -27.17 kcal/mol
 frequency of mfe structure in ensemble 0.869965;
>SNORA44
CAGCA_UGUU__UCCAAGGGCUGUGGCU_GGUUGUAG___CCAUGGGAUCUCCAACUGCAUGCGAGAGCAACCUGGAGAGACUUUGACAGCUCAGGUCAGCACAGUAC____CUGCA_GCUGCCACUCACCUUUCCUAUAAUU
....................((((((((.(....)))...))))))..(((.((......))..))).......(((((........((((.(((((.........))....)))...)))).........)))))....... (-15.31 = -14.56 +  -0.74)
 free energy of ensemble = -17.73 kcal/mol
 frequency of mfe structure in ensemble 0.864441;
>SNORA42
GCAUGGGUUUGGAUUUAUGGCAGGC__CCGUCCCCCUGGGCCUCUCAUAGU_GUCCCAUGCCAGAGCAAACUGUGGCCCCGAACCAUUGCCCGGCCUC_GUGCCUGUAGGCUGCUGGCACUGAAGUGGGUUGCACAGUG
((((((((....(((.((((.(((...((........)).))).))))))).)))).))))((..........((((((............((((((..........)))))).............)))))).....)) (-19.16 = -16.57 +  -2.60)
 free energy of ensemble = -20.79 kcal/mol
 frequency of mfe structure in ensemble 0.881845;
>SNORA50
AAGCACUGCCUUUGAACC__UGAUGUGUCUUGUUUGUAGCUUCUCGGGCCAAGCAACAGUGCUAGAGCAUAA___GGACUUGUU_AUAACUGGGGCUCCUCAG__CUCUCAA_CUGAACUGCUCUUUUAAAAACAAGGUACAUUU
..((((((..((((..((..(.....((..........)).....))).))))...))))))................((((((.......(((.(..(((((..........)))))..).)))......))))))........ ( -9.71 =  -8.14 +  -1.57)
 free energy of ensemble = -11.47 kcal/mol
 frequency of mfe structure in ensemble 0.815007;
>SNORA1
AGCCUCAUUCUAGA_____UGAGAAUGGGCACUGUUG_A___UCAUG_GUGUC_CA_AAAAUUGUUAAUGUGGCUAAAUUGAGAC_ACAGGUUAUGCUUCCAU_CACAGUA_AAUGUA__UUGCAGUGGUGACAAUGAGACCUGUAACAUUU
.(((.((((................(((((((................))))).))..........)))).)))............(((((.........(((.((..((............))..))))).........)))))....... (-13.92 = -12.68 +  -1.24)
 free energy of ensemble = -14.68 kcal/mol
 frequency of mfe structure in ensemble 0.958268;
>SNORA7
GACCUCCCAGGAUCGCAUCUGGAGAGUGGCUAGUAUUCUGCCAGCUUCGGAAACGGGAGGGAAA___GCAAGCCU_______GGCAGAGG__UACCCAUUCCAUUCCCAGCUUGCU___CAGU_AGCUGGUGAUUGGAAGACACUCUGCAACAAUG
..................((((((((.........)))).))))((((........)))).......................(((((..........(((((.((((((((............)))))).)).))))).....)))))....... (-22.93 = -22.09 +  -0.84)
 free energy of ensemble = -23.70 kcal/mol
 frequency of mfe structure in ensemble 0.96033;
>SNORA2
UUGGCCCUGAAUC_AAGGC___CACAGGUUUGC___UGAAGCUGUUGGUUUCAAGCAGGAGCCUAAAGAAAUGUCUUUCU_AUGGUCUGUUGGCCAUUUCAGAAAUUUGAAAAUGUAAUGGUCAAUUCAUUAGAAAGAAACAUCU
......((.......)).......................(((.(((........))).)))...........((((((...........(((((((....................)))))))........))))))....... ( -6.64 =  -6.68 +   0.03)
 free energy of ensemble =  -8.46 kcal/mol
 frequency of mfe structure in ensemble 0.848949;
>SNORA9
UAGCAAG_C_CU__CCAGCGUGCUUGGGUCUGCAGUGACCCUGU_GCAUUCCUACAGUGCUUGCCAGAA_CAGUUUUGAAAC_GGUUUGAGGCCUUGCCCUG_CUCC__AUC__C__AGAGCAAGGUUAUAG__AAAUUUCAGACAAUU
..(((((.(.((....((.((((...((((......)))).....))))..))..)).))))))............(((((....((((.((((((((.(((............)..)).)))))))).)))..)..)))))....... (-28.51 = -25.87 +  -2.64)
 free energy of ensemble = -29.61 kcal/mol
 frequency of mfe structure in ensemble 0.95166;
>SNORA21
CCCC_UUUUAAAAGCACUCAGUGGGCCUUUUGCUAAUGACCCACUGAGCCGUCAAGAAGGGGCAGAGUGAAAA_CACCACUUUUGGGUGAAGUGGCAACAUGUU_UGUUGUUUAACUUCAAUCGGUGUUGUGACAAGA
(((.............(((((((((.(..........).)))))))))((.(......).))..(((((........)))))..)))(...((.(((((((.....((((........))))..))))))).))...) (-25.00 = -25.32 +   0.32)
 free energy of ensemble = -28.06 kcal/mol
 frequency of mfe structure in ensemble 0.370857;
>SNORA19
GUGCACAUUUCAUUGACCUGCUUUCUUUUGUA__AUGUGAGCAGUGUUAUUUCUUAUGUGCUAUACAAAUAGUUGAAGGUUAAUUAGCAGUAUAACUAUAAA_UAGU_AA_U_GCUGCCAGUCUCCUU_CAGACAAAA
..((((((.....((((((((((.(...........).)))))).))))......))))))............((((((...(((.((((((...................).))))).)))..)))).))....... (-22.58 = -21.12 +  -1.46)
 free energy of ensemble = -23.72 kcal/mol
 frequency of mfe structure in ensemble 0.947138;
>SNORA22
UUGCACAGUGAACACCCAAGUGUGCU_UUAUAGUU_C_C____CUUGGCUU__UGACUCUGUGCUAGAGCAAUG____UCUGUUCUUUUCCUCUG_CAUUGAAAGGACUAUU__UAUCCUUUUAAAUGUAUUCAGAAAGUCAGCACAUUA
..((((((.......(((.(.(.(((.....)))..)......).)))..........))))))...............(((...(((.....((.(((..((((((.........)).))))..)))))....)))...)))....... ( -8.76 =  -6.88 +  -1.88)
 free energy of ensemble = -10.50 kcal/mol
 frequency of mfe structure in ensemble 0.912679;
>SNORA30
UGAGCACUUU_CACAGGUCCU_CCCUCAGUCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAUAAAACCC_UUGAUUGCAU__CCUUGCCCUGGUACU____GUACCAG_UGGCAGCUGUCACUCAAUGGGACAGUG
..((((((.....((((((((..((((.......))))..))))))))......)))))).........((..((((.((.((....(((((((((...........))))..)))))..)))).)))).))....... (-26.22 = -23.73 +  -2.49)
 free energy of ensemble = -27.23 kcal/mol
 frequency of mfe structure in ensemble 0.86044;
>SNORA43
GC_UGUCCUGGACCUG______CCAGCACCACAGAUGCAGCUGCUCUGCUGCGCCUGUGACA__UCGG_GGCAAAGAGAAAGUGGCUAUUUCUACGCUCAGUGCUCAGAAACCAGUGAGCACUAAGAAUGGUUUGUAGCCUGACAUUU
........(((...........)))................(((((((.................))).))))..........(((.((..(((..((...((((((........))))))...))..)))...)).)))........ ( -9.82 =  -8.77 +  -1.05)
 free energy of ensemble = -12.19 kcal/mol
 frequency of mfe structure in ensemble 0.832911;
>SNORA56
CGGCAGACAGUUAUCCC_UUUCUAGUCUGGCUCGUGGGA_CUCUAGA_GGGAGUCAGUCUGCAACA_GUAAG___UGG_UGAG___UUCU___UCUGUCCAGCGUCA__GUAUUUUGAUGG_UGGCUUUAGA_CUUGCCAGAUAACA
..((((((.....((((.(((..((((..........)).))..))).))))....)))))).............(((.(((.....(((......(.(((.(((............)))..))))...)))..))))))....... (-23.53 = -23.51 +  -0.03)
 free energy of ensemble = -24.82 kcal/mol
 frequency of mfe structure in ensemble 0.884319;
>SNORA58
GGGCAUACCCGUAGACCUUGCCUGACUGUGCUCA_UGGCCAGGCAGGGGGGACAGU_GUAUGCAAGAGU_AAUUUGGAG_UUCGUGCCAGC_UCUAGCCAGCUU_____AAUCAGUGGCUGGAUAAAUUGCAGUACUCCAA_CAUUC
..(((((((.((...(((((((((.((.........)).)))))))))...)).)..))))))..((((......((((.(...(((..........((((((.............)))))).......)))..)))))....)))) (-34.81 = -33.87 +  -0.94)
 free energy of ensemble = -36.32 kcal/mol
 frequency of mfe structure in ensemble 0.884849;
>SNORA52
UGGUCCAU_CCUAAUCCCUGCUGG_UCAGCC__UGUG_GC__CUGCCAGGUUUCGCUUGUGGACCAGAGCACCCUAGAAG_CCUCAC_C_C_GAG__GAGUGAG_CAG_GGCUUCAGUGGGCUCAUGCCAGGG_GCG__CUUCUAGACACUC
..((((((........((((..((.(((.......)).))..)...))))........))))))..........((((((...((..............(((((.................)))))......).)....))))))....... (-13.91 = -12.19 +  -1.73)
 free energy of ensemble = -15.93 kcal/mol
 frequency of mfe structure in ensemble 0.855837;
>SNORA61
ACCCUCCGGUU_CCCUUUCCCAUCGGAUCUGAACACUGGUCUUGGUGGUCGUAAA_AGGAGG_____AAAAGUAAUAC___UGAAGCUG_GCCUCACAG_UG_UUGU___AGUCUGGUAUAUAGCA_GUGGGCUAGUUUCAAACAAGG
..(((((............((((((((((........))))).))))).........)))))...................(((..(((.(.((...................................)).))))..)))....... (-10.31 =  -9.83 +  -0.48)
 free energy of ensemble = -11.65 kcal/mol
 frequency of mfe structure in ensemble 0.916367;
>SNORA32
UGGUCAUUACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGACAUGACCAUAAAAAAA__UUUCCCACUAGGUUUUCUA_UCUGCUACUUUGCUAGCAAUCAGCCUAUUGGGAACAUUU
(((((((..(((.(((....((((......)))).....))).)))..)))))))...........((((((..(((((........(((((......)))))...)))))..))))))..... (-21.59 = -21.71 +   0.12)
 free energy of ensemble = -23.33 kcal/mol
 frequency of mfe structure in ensemble 0.731507;
>SCARNA24
UGGACAUUUAU__UUUUAUUCAGUUUCUUCUCAAGGUGAAGAUA_ACU_CUUUGUAAAUGUCCUAGAGA_______AAUAUAGUAGCUUUCUGUUCACCCUUUGCAAG_UAA_AAAG_GGUGGAUCGUUCCACUACUGACAUUU
.((((((((((..........(((.(((((.......)))))...))).....)))))))))).................((((((......(((((((((.(..........).)).))))))).......))))))...... (-22.20 = -20.72 +  -1.47)
 free energy of ensemble = -23.23 kcal/mol
 frequency of mfe structure in ensemble 0.929874;
>SCARNA4
ACUGGAGGACUAA_GAAGGCUGAG_UCUGAUGAAGCAAGACUCUGCUGAUACAAUCCUCCUAGAAAA_AA_GGGUUGGAGAGAGCAGCCCUUACUGG_____AGAAUA_UCAC_AGGG_CUGACUGUACUACCCAACAUUC
...((((((........(((.(((.(((.........)))))).))).......))))))...........(((......(.((((((((....(((............)))...))).))).)).)....)))....... (-28.10 = -27.44 +  -0.66)
 free energy of ensemble = -29.64 kcal/mol
 frequency of mfe structure in ensemble 0.901268;
>SNORA18
GUUGAGGUCUAUCCCGAUGGGGCUUUUCCUGU_AGCCCU_ACAUCGUUGGAAACGCCUCAUAGAGU_AACUCUGUGGUUUUGCUUUACUCACAGGACUAUUU___GUUAGAUCU_GUGGG_AA_AGA_ACUACAAGACAGUU
..((((((...((((((((...((.........))......)))))..)))...))))))..............(((..........((((((((.(((........))).))).))))).........))).......... (-17.20 = -15.07 +  -2.13)
 free energy of ensemble = -19.05 kcal/mol
 frequency of mfe structure in ensemble 0.901692;
>SCARNA15
CUGGAGAC__UAAGAA__AAUAGAGUCCUUG_AAGUCAAGCUGACUCUGCUUUUA___GCCUCCUAAAUGAAAA_GGUAGAUAGAACAGGUCUUGUUUGCAAAAUAAAUUCAAGACCUACU__UA_UCUACCAACAGCA
..((((..............((((((..(((.....)))....))))))...........))))...........((((((......(((((((.................)))))))........))))))....... (-14.68 = -13.18 +  -1.50)
 free energy of ensemble = -16.08 kcal/mol
 frequency of mfe structure in ensemble 0.901871;
>SCARNA23
GUGCUCACUAGGGCUCGGUCCUCUCC___AUGUGGUCCUGACCUGCC____CUCCGUGAGCAAGAG_AAACAG__GACUGG_UUUGGGGGUGUCCUGUCCGAGUGGACA_CGGGACACCACGGUUUUCAGUACAACA
..((((((...((...((((....((.......))....))))..))........))))))...............(((((......(((.(.((((.((....))....)))).).)).).....)))))...... (-17.53 = -15.78 +  -1.75)
 free energy of ensemble = -20.01 kcal/mol
 frequency of mfe structure in ensemble 0.799191;
>SNORA38
CCCUCCUACAAAGGCGUGUCUGUGGUUCCCUGUCUUUGGACACGUAAGAAUUGGAGGCAAAGAAAUG___UGGAUUUGGAGAAG_UCUGGGGCCAGCUUGCU____CCCUGCAGGCUCAAGAUCAACCA_UCCCACAUAG
.(((((.......(((((((((..............))))))))).......)))))..............(((...((....(.(((.(((((.((.............)).))))).))))...))..)))....... (-24.87 = -24.10 +  -0.78)
 free energy of ensemble = -26.07 kcal/mol
 frequency of mfe structure in ensemble 0.925327;
>SNORA29
UUUCCCAUUUGACUACCACAUUUUCUCCUAAUAAUAGAUUUUAGUGGCUAUGCUUAUGGGAUAGA_UUAAA__AUUGCCAUGAUCUGAAGAGGGAGGGUUUUUU___UGUGUCCUCCUC_C__UAUAUGAAA_UGGCUGAACAG_AAAAUG
..((((((.......((((........................))))........)))))).............(.(((((..((((.((.(((((.................)))))..)..).)).)).).)))).)............ (-13.53 = -12.28 +  -1.24)
 free energy of ensemble = -15.55 kcal/mol
 frequency of mfe structure in ensemble 0.881412;
>SNORA54
GAGCACUGUUCGUAACCUGUUAGCAGCGCAGUG__GCUAAU__GGGUUCCAUUCCAGUGCUACAGCAU___AUCCAGUGAC_CAUGACAGA_AGGCUGG____UGGC_UGUCAGUUCCAGGUCA_____UGGAGACAUAC
..((((((...(.(((((((((((((......).)))))))..))))).)....))))))............((((..(((....(((((.....................)))))....)))......))))....... (-28.14 = -22.30 +  -5.84)
 free energy of ensemble = -29.92 kcal/mol
 frequency of mfe structure in ensemble 0.560886;
>SNORA55
__GCACCUGAAUCUUUCCCAUUCCUU_GCUGCUUCGUGCUGGUGUGGGGACAGAUGGUGCUACAGUAUGAGCAGAGGAAAUCCAGACAGGUUGUUU_UCCA_UUUGUCU_UGGGGCCUGUCUCUACAAC_UCUGCCACAUUU
..(((((.......(((((((.((...((........)).)).))))))).....)))))..........((((((........((((((((.(.................).)))))))).......).)))))....... (-33.31 = -31.72 +  -1.59)
 free energy of ensemble = -34.08 kcal/mol
 frequency of mfe structure in ensemble 0.9581;
>SNORA51
GGCCUCCUGGUGCUUACCA_CAGGCUGUGUUCUUACACUGACUGUAUAGAAAGAG_GAGGCAGAGUAAACCUACCCCAUGUACACCUCAGCCCAGGCCA_UGUGCCUGGUCUGUAUUGUGAAU_GGGGAGACAUGG
...(((((....((....(.(((.(.((((....)))).).))))..))....)).)))..............((((((.((((...(((.((((((......)))))).)))...)))).)).))))........ (-20.57 = -21.12 +   0.55)
 free energy of ensemble = -23.12 kcal/mol
 frequency of mfe structure in ensemble 0.631641;
>Hsp90_CRE
AGUCUUGAAAAAAAUUUCGUACGGUGUGCGUCGUAACAACAAACAGCGUCUGAAAAGUUUUGUGAAUUUCCAAUUCUAUACAAAGCAAAGUGAAAAUAUCUGUAUUUUUACCUUUAUUCUGUGAAUAGAACGAAAAACAUACAUACAAGGUG
..(((((........((((.(((.(((..((.......))..))).))).))))..((((((((((((...)))))...)))))))...(((((((((....))))))))).(((((((...)))))))................))))).. (-17.66 = -18.05 +   0.39)
 free energy of ensemble = -20.47 kcal/mol
 frequency of mfe structure in ensemble 0.467936;
>BTE
ACACC_ACUAGCACA_A__C_GGAUCCUGGGAAACAGGCA_GAACUACG___GUUCG_UAAGCUCG___________GGUAGGCCGUCAA___________CCUACCGCCGUAUCGUACUGUGUUUGGCC
.........((((((.(.....(((((((.....))))...(((.........))).....................((((((..................)))))).....)))...)))))))..... (-15.87 = -11.13 +  -4.74)
 free energy of ensemble = -17.66 kcal/mol
 frequency of mfe structure in ensemble 0.842927;
>ROSE
_____________________CCGGCCGCC__UAA__GGGGCCGGCA______GAGAGGGGCGCCGG___CGU___CCGGCGCCUG____CUCGUA_UCCAUGUUGCUCCAAGGAGGAUAUGGCUAUGAGAA
.....................((((((.((.......))))))))............(((((((((((.......)))))))))))....((((((..(((...(.(((....))).)..))).)))))).. (-35.59 = -30.32 +  -5.28)
 free energy of ensemble = -37.94 kcal/mol
 frequency of mfe structure in ensemble 0.745881;
>UnaL2
UGCACACAUGACUG__UA_AGUCGCUUUGGAUAAAAGCGUCUGCUAAAUGGCUUAUA
.......................((...((((......))))))............. (  6.32 =   6.36 +  -0.05)
 free energy of ensemble =   4.84 kcal/mol
 frequency of mfe structure in ensemble 0.923492;
>HLE
GUAGACAUUUCACAUCAUU_CGCCGGGAUUGCGCAAAUGUUGCUUUGAAGUG_UUGCAAACAUGCGAAUCCUAAA__UCGGUUCACGGCUUCGUUGGCUUAGUUUCCUGGCUUAUAUCCUGGAAACCCGCCGGC
(.((.................(((((((((.((((..((((((............)).))))))))))))).......))))......)).)((((((...((((((.((.......)).))))))..)))))) (-22.72 = -21.30 +  -1.42)
 free energy of ensemble = -25.89 kcal/mol
 frequency of mfe structure in ensemble 0.357266;
>SNORA33
AAGCCAG_CCAAUG__AAUCUGC_UUAC__CUGAAUGUGU_UUCUGCAGA_AAUUU_AGA_____AAAAG____CUGGCAAUA___GUAAAGCCAUGUUACGAGCCUUAAAGACAU_____UGAAGUCGUUAAGGUCCCUGAAAAUGGCUACAACA
..(((((......(....(((((......................)))))...)....................)))))............(((((.......(((((((.(((...........))).)))))))........)))))....... (-16.18 = -15.87 +  -0.31)
 free energy of ensemble = -17.62 kcal/mol
 frequency of mfe structure in ensemble 0.919729;
>SNORD87
GCUGGCACAAUGAUGAC__UUA____AGUUUUUGCCGUUUACCCAGCUGAGGGUUUCUUUGAAGAAAUAAUUUUAA__GACUGAGAUGCCAGU
..(((((.....................(((((.......((((......)))).......))))).....((((......)))).))))).. (  0.34 =   0.05 +   0.29)
 free energy of ensemble =  -2.23 kcal/mol
 frequency of mfe structure in ensemble 0.658047;
>SNORD37
AUUCAUGAUGACUGA__AAUUCUUCACUUUGACCUG_AUGUCUGUUGAAGA_AACUCUGUGUCUGAGA
...((.((((.........(((((((....(((......)))...)))))).)......))))))... ( -0.99 =  -1.55 +   0.56)
 free energy of ensemble =  -2.24 kcal/mol
 frequency of mfe structure in ensemble 0.714624;
>SNORA27
UACCCCCUUUUCACUUUGC_CAAUUGGAC____UUA_____UGUCUUUAUUGGUCAUUCAAGUGGGGCAAAGGAAA_UA_UC_CUUUU_AAAACUCAGGCAAAC_UGGGU_GUUUG_UCUUG______UAUCCUGUCAGAG_GAAACAAAU
...((((.(((......((.(((..((((.............))))...))))).....))).))))...............................((((((.......))))).).............(((.....)).)........ (-10.86 = -10.33 +  -0.53)
 free energy of ensemble = -12.58 kcal/mol
 frequency of mfe structure in ensemble 0.89064;
>PrrF
UUGACUUGCAAAUGAGAAUGAUUAUUAUUUCACUCAACUGGUCGCGAGAUCAGCCGG_UAACCUG_AAAGACCCAGG__GUCGGACUCU_CAGAUUAUCUCCUCAUCAGGCUAAUCACGGUU_UUUGACCCGGCUUUUU_GCCGGGUCUUUUUUUG
....................................(((((((....))))))).((.(((.(((.(.((.((.........)).)).).))).))))).(((....)))................((((((((......))))))))........ (-28.39 = -26.13 +  -2.25)
 free energy of ensemble = -30.45 kcal/mol
 frequency of mfe structure in ensemble 0.830355;
>mir-399
AUAUGCAUUACAGGGCAAGUUCUCCUUUGGCAGAGG______UAGG_________UCGAGCUUAUCAGCG_________AUGCAUG__UCAAUUGCUA___________________UCUCUGCCAAAGGAGAUUUGCCCUGCAAUUCAUCU
....(.(((.(.(((((((..((((..(((((((((.................................................................................)))))))))..)))).))))))).).))).).... (-22.25 = -21.13 +  -1.12)
 free energy of ensemble = -22.69 kcal/mol
 frequency of mfe structure in ensemble 0.946808;
>mir-133
AAUGCUUUGCU____GUAGCUGGU_AAAAUGGAACCAAAUC____GACUUUUCAA_UG____G_AUUU__GGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAU
.........((......(((((((.........(((((((........................))))..)))........)))))))..))............ ( -6.43 =  -5.21 +  -1.22)
 free energy of ensemble =  -7.61 kcal/mol
 frequency of mfe structure in ensemble 0.959201;
>mir-395
GUGUUCCCGAGAGUUCCCUUCAAG_CACUUCACGUGGCACUU____UUUU_CAAUGCCUCAUUA________________________________________________UACAGUGAAGUGUUUGGGGGAACUCUCGGUGUCAC
....(.(((.((((((((((.((..(((((((.((...............................................................................)).))))))))).)))))))))).))).).... (-18.83 = -16.93 +  -1.89)
 free energy of ensemble = -20.03 kcal/mol
 frequency of mfe structure in ensemble 0.924714;
>Cardiovirus_CRE
UCGGCCACAAACACACAAUCUACUGUUGGCCGA
..(((((...................))))).. ( -0.75 =  -1.00 +   0.25)
 free energy of ensemble =  -1.42 kcal/mol
 frequency of mfe structure in ensemble 0.76213;
>p27_CRE
CCACCUUAAG_GCCGCGCUCGCCAGCCUCGGCGGGGCGGCUCCCGGCGCCGCGACCAAUG
((......((.((.((....))..)))).))(.(((((((.......)))))..))...) ( -5.97 =  -6.87 +   0.90)
 free energy of ensemble =  -7.26 kcal/mol
 frequency of mfe structure in ensemble 0.839115;
>mir-15
GCCUUAGAGUACUGUAGCAGCACAUCAUGGUUUGUA_UACUAUAGAAAAGA__UGCAAACCAUAAUUUGCUGCUUUAGAAAUUUAAGGA
..((((((........((((((....(((((((.((.................)).)))))))....))))))........)))))).. (-13.49 = -11.02 +  -2.48)
 free energy of ensemble = -14.40 kcal/mol
 frequency of mfe structure in ensemble 0.917162;
>mir-34
GUGAGUGUUUCUUUGGCAGUGUCUUAGC_UGGUUGUUGUGAGCAAUAGUAA_GGAAGCAAUCAGCAAGUAUACUGCCCUAGAAGUGCUGCAC
...((((.((((..((((((((.((.((.((((((......................)))))))).)).))))))))..)))).)))).... (-24.14 = -20.92 +  -3.21)
 free energy of ensemble = -24.70 kcal/mol
 frequency of mfe structure in ensemble 0.950163;
>U1A_PIE
CCAC_ACAGCAUUGUACCCAGAGUCUG__UCCC_CAGACAUUGCACCUGGCGCUGUUAGGCUGGA___AUUAAAGUGGUUU
.....(((((.......((((.((....................)))))).)))))......................... (  2.49 =   2.56 +  -0.07)
 free energy of ensemble =   1.86 kcal/mol
 frequency of mfe structure in ensemble 0.974142;
>IRES_APC
AGCCUUCCUCUAACUGAAAAUUUUUCCUUACAAACAGAUAUGACCAGAAGGCA
..................................................... (  6.37 =   6.37 +   0.00)
 free energy of ensemble =   4.98 kcal/mol
 frequency of mfe structure in ensemble 0.686222;
>ApoB_5_CRE
AUUCCCACCGGGACCUGCGGGGCUGAGUGCCCUUCUCGGUUGCUGCCGCUGAGGAGCCCGCCCAGCCAGCCAGGGCCGCGAGGCCGAGGCCAGGCCGCA_GCCCAGGAGCCGCCCCACCGCAGCUGGC
.......((((...((((((((..(.(((..(((((.((((((.(((((((.((......))))))..(((..((((....))))..)))..))).))).))).))))).)))))).)))))))))). (-40.90 = -42.86 +   1.96)
 free energy of ensemble = -42.32 kcal/mol
 frequency of mfe structure in ensemble 0.630883;
>mir-92
AUUCAUCCACAGGUGGGGAUUUGUUGCAAUGCUUGUGU_UAUAUA_UAAAGUAUUGCACUUGUCCCGGCCUGUGGAGGAAAG
.(((....((((((.(((((..((.(((.(((((..............))))).)))))..))))).)))))).)))..... (-18.16 = -17.13 +  -1.03)
 free energy of ensemble = -19.11 kcal/mol
 frequency of mfe structure in ensemble 0.935318;
>JEV_hairpin
AUGGAGUCAGGCCAG__CAAAA_GCUGCCACCGGAUACUGGGUAGACGGUGCUGCCUGCGUC
.....(.((((((((.........))).(((((.............)))))..))))))... ( -7.85 =  -7.61 +  -0.23)
 free energy of ensemble =  -8.73 kcal/mol
 frequency of mfe structure in ensemble 0.931233;
>RSV_PBS
AUUCCCUAACGACUACGAACACCUGAAUGAAGCAGAAGGCUUCAUUUGGUGACCCCGACGUGAUCGUUAGGGAAU
..((((((((...((((.........(((((((.....)))))))((((.....))))))))...)))))))).. (-17.25 = -16.76 +  -0.49)
 free energy of ensemble = -18.55 kcal/mol
 frequency of mfe structure in ensemble 0.908433;
>HCV_SLVII
AACUUAUUGCCC_AGGGGGGGAGGGCCGCCAUUUGUGGCAAGUACCUCUUCAACUGGGCAGUAAAG
......((.(((......))).)).............((.....((.........))))....... (  3.14 =   3.74 +  -0.60)
 free energy of ensemble =   0.99 kcal/mol
 frequency of mfe structure in ensemble 0.968687;
>HCV_SLIV
UUGUGCCUACUCCUACUUUCCGUAGGGGUAGGCAUCU
....((((((((((((.....)))))))))))).... (-16.96 = -16.51 +  -0.45)
 free energy of ensemble = -16.96 kcal/mol
 frequency of mfe structure in ensemble 0.99995;
>snosnR48
UUACA_AUGAUGAU_CUCAUUU________AUGUUU_UUUCUGGCAUCUCUAAUGUUAGGAUG_CGAAGUUUAAGUACUCUC_CACUCGAUGAAUACAA_CUUUUGAC___AAUAUCUGAAA
......................................(((((((((.....)))))))))............................................................. (  0.86 =   1.20 +  -0.33)
 free energy of ensemble =  -2.37 kcal/mol
 frequency of mfe structure in ensemble 0.416907;
>snosnR55
UUAUUUGAUGAAUA__CAUUACA__CAUCUUUUU_UUAUCCGGCGAUGAUUCCUU__GAA_UAUGUGCCAUGGAUAAAAACAUGCAUCACCAUCUGAUU
......((((...........................(((((((......................)))..)))).......((...)).))))..... (  1.70 =   2.03 +  -0.33)
 free energy of ensemble =  -0.31 kcal/mol
 frequency of mfe structure in ensemble 0.581024;
>snosnR54
UAAGAUGAUGAUCAACUUUU_UAAAUUAAUAACUUUCGUUCUACUGACUG________________CGAUCAAACGAUCUUGUAGAAAA__CUUU__UACUCUGACU
......................................((((((.......................((((....))))..)))))).................... (  2.48 =   2.99 +  -0.52)
 free energy of ensemble =   1.43 kcal/mol
 frequency of mfe structure in ensemble 0.807938;
>snosnR57
GGCU__ACAUGAUUAUAAAAAAUGAUAUAAAUAUUUUACUGAGGAAGUAUAUGCAGGACAUAUUGUGAAUUAGGAAUUCUUCGUUUAUGAUCU___AGCA
..........(((((((((....................(((((((..............................))))))))))))))))........ (  0.46 =  -0.42 +   0.88)
 free energy of ensemble =  -0.86 kcal/mol
 frequency of mfe structure in ensemble 0.651244;
>snosnR69
UUUAAUGAUGAUAACAAGCCCAAAG__UCACAAU_____GCUAUAAACCCAGCUCUUCGAU_UCAUUUGAAAUGA_______GAAGAAAAAUUUAUC_________________CUGAUA
........................................................................................................................ (  6.93 =   6.93 +   0.00)
 free energy of ensemble =   6.82 kcal/mol
 frequency of mfe structure in ensemble 0.971871;
>snosnR61
UUUCCAUGAUGAUAAA____UUUUUUUCAGUUCUGC_UUCUGAAC_____AAAACUUGAAGAU__AACC_AA____UAUACCAAAACU________UUCUGAUAU
......................................................................................................... (  6.79 =   6.79 +   0.00)
 free energy of ensemble =   6.55 kcal/mol
 frequency of mfe structure in ensemble 0.992998;
>snosnR66
AU_AUUUAUAAAAUGAUGAAAUACCAAUGCAACA__GAGUCAAGCUCUGAGCU_U_CAAAAAGAAA______CAUGGACGAGA_UUGC_UUUUUAUUA_____CUGACCA_AAUUA_
............................((((......((((((((...)))).).....................))).....))))............................. (  3.49 =   3.49 +   0.00)
 free energy of ensemble =   1.88 kcal/mol
 frequency of mfe structure in ensemble 0.521097;
>snosnR71
UGUUAUAUGAUGAUAACCU_UA_CUCAGCUCACUCAGA_UCAUCUG__AUGAUUGAUAAAAAUUUCCUAUCCAACAUUCAUCAAUUUAUCUGACCAAAAA
.................................................................................................... (  6.88 =   6.88 +   0.00)
 free energy of ensemble =   5.67 kcal/mol
 frequency of mfe structure in ensemble 0.754707;
>HIV_FE
UUUUUUAGGGAAAAUCUGGCCUUCCCACAAGGGGAGGCCAGGGAAUUUUCUU
........(((...(((.(((.((........)).)))..)))...)))... (  3.72 =   4.56 +  -0.84)
 free energy of ensemble =   2.15 kcal/mol
 frequency of mfe structure in ensemble 0.982602;
>HCV_X3
_UGGUGGCUCCAUCUUAGCCCUAGUCACGGCUAGCUGUGAAAGGUCCGUGAGCCGCAUGACUGCAGAGAGUGCUGAUACUGGCCUCUCUGCAGAUCAUGU
.....(((((.......(((....((((((....))))))..)))....)))))(((((((.((((((((.(((......))))))))))).).)))))) (-34.34 = -33.98 +  -0.37)
 free energy of ensemble = -36.22 kcal/mol
 frequency of mfe structure in ensemble 0.870907;
>snoF1_F2
UUAUG_CCAUUUGGUAUCUGACACAUAAUC_ACUUUUCUGACUAUGUGUCUCGAAACAUGGCAGAAAAUAAGGGGGAACGGACCUUGCGACACUGGUGGCUCCUAUAUGAGCCUCCAAUUACUAUAUACCCGUUUACAUUU
...((.((((...((.((.(((.(((((((.........))))))).)))..)).))))))))............((((((..........(((((..(((.(.....))))..)))))..........))))))...... (-25.21 = -24.59 +  -0.63)
 free energy of ensemble = -27.58 kcal/mol
 frequency of mfe structure in ensemble 0.619173;
>IRES_IGF2
ACGACUGGGCAUUGCCCCCAGUUUCCCCCAAAUUUGGGCAUUGUCCCCGGGUCUUCCAACGGACUGGGCGUUGCCCCCGG_ACACUGGGGACUGCCCCCGGGGUCUCGCUCACCUUCAGCAG
(.(((((((((.(((((..(((((.....))))).))))).)))))...)))).)(....(((.((((((....((((((....(........)...))))))...))))))..)))....) (-31.09 = -31.19 +   0.10)
 free energy of ensemble = -34.44 kcal/mol
 frequency of mfe structure in ensemble 0.546601;
>IRES_Cx32
AUAUGACUCCCCAGCACCGGGCGGCGAUGAAUUGGGACGCAGGCGCGGA_CC_CAGGGACCACUCCCCCUGCACAGACAUGAGACCAUAGGGGACCUGUCUGGGUGGCCUCAGGGAUAGGCGCUCCCCA_AGGUAAGAGGGCUUUGU_GAGUU
....((((((((...((((((.((((......((((.(((....)))...)).))((((....)))).((((.((((((.(...((....))...))))))).))))((....)).....)))).)))...)))....))).......))))) (-30.54 = -30.92 +   0.38)
 free energy of ensemble = -33.63 kcal/mol
 frequency of mfe structure in ensemble 0.433136;
>K_chan_RES
GUGGGCUAUGGAGACAUGG_ACCCCAAGACCAUGGGGGGCAAGAUUGUGGGCUCCC_UGUGUGCCAUUGCUGGUGUGCUGACCAUUGCCCUGCCUGUGCCUGUCAUUGUCUCCAAC
.................................................................................................................... (  7.08 =   7.08 +   0.00)
 free energy of ensemble =   6.90 kcal/mol
 frequency of mfe structure in ensemble 0.996478;
>mir-129
UGUCCUUC_CGGAUCUUUUUGCGGUCUGGGCUUGCUGUUCCUAACA_CAGUAGCCAGGAAGCCCUUACCCCAAAAAGUAUCUGCGGAGGGC_
..((((((.((((((((((((.(((..((((((.(((.................))).))))))..))).))))))).))))).)))))).. (-29.67 = -28.87 +  -0.80)
 free energy of ensemble = -30.03 kcal/mol
 frequency of mfe structure in ensemble 0.905777;
>ctRNA_p42d
AGAAGGGCUUCCACGACGGCAA__CGUUC_GGGGGCCUUUUUCUUUUGC
(((((((((((((.((((......))))).))))))))))))(....). (-14.94 = -13.77 +  -1.17)
 free energy of ensemble = -15.37 kcal/mol
 frequency of mfe structure in ensemble 0.932662;
>S-element
UGUCAAGAGUCUUUGGCGCCG___U__UUU_GGUGA_GCGGAUUUCUUUUGCCUU__C_U_GAAAGGUG_AA_AGAA_AUG
....(((.........((((...........))))..........)))((((((..........))))).).......... ( -1.03 =  -0.49 +  -0.54)
 free energy of ensemble =  -2.53 kcal/mol
 frequency of mfe structure in ensemble 0.919696;
>SCARNA17
CUCUCAGGUCCCCAGUGCAGCCCCAAGAUGAGCCCGCAGUAUUUUCCUUAUAUGAUCAGGUCCUACCGUGGGCA_GCGCUGCUUGCCCAGAGCCUGAGAGGAUUAUGAAAACAUGGCAAGGGAAGUGAGGCCAGGGGACCCAGAA
..((..(((((((...((.............(((((...(((..(((((......((.(((.((.....(((((.((...)).))))))).))).)))))))..)))....)).)))............))..))))))).)).. (-24.47 = -24.42 +  -0.05)
 free energy of ensemble = -26.28 kcal/mol
 frequency of mfe structure in ensemble 0.612073;
>snoU2-30
GAGCAAUGAUGAAAAGG_UUU_UACUA__CUGACCUUU_GUAACUAUGAAGGUUUCUACACUUGACCUGAGCUCA
(......(((......).)).........)(((.(((............(((((.........)))))))).))) (  0.92 =   1.00 +  -0.08)
 free energy of ensemble =   0.36 kcal/mol
 frequency of mfe structure in ensemble 0.957604;
>snoU2_19
GAUCAAUGAUGAA_AAUAGCCAAAUCUGAGCAUCAGAAGACC_UUCCAGUCU_ACCUGAUGC_AUGAUCUCUAUAG__UUCUGAGA
.............................(((((...((((.......)))).....)))))........................ (  0.87 =   1.12 +  -0.25)
 free energy of ensemble =  -0.72 kcal/mol
 frequency of mfe structure in ensemble 0.914936;
>Corona_SL-III
CACUCCCUGUAAUCUAUGCUUGUGGGCGUAGAUUUUUCAUAG
......((((((((((((((....))))))))))....)))) ( -5.62 =  -5.82 +   0.20)
 free energy of ensemble =  -5.90 kcal/mol
 frequency of mfe structure in ensemble 0.914608;
>EAV_LTH
UGCCAUCGUCGUCGAUCUCUAUCAACUACCCUUGCGACUAUGGCA
..((((.(((((.....................))))).)))).. ( -3.00 =  -3.00 +   0.00)
 free energy of ensemble =  -3.79 kcal/mol
 frequency of mfe structure in ensemble 0.806661;
>Parecho_CRE
UUUGAAAGGGGUCUCCUAGAGAGCUUGGCCGUCGGGCCUUAUAACCCGACUUGCUGAGCUUCUCUAGGAGAGU_CCCUUUCCCAGCCAUGAGGUGGCUGGUCAAUAAAAACCCC_AA
...(((((((...((((((((((((((((.((((((........))))))..))))))).))))))))).....)))))))((((((.......))))))................. (-34.30 = -37.14 +   2.84)
 free energy of ensemble = -35.01 kcal/mol
 frequency of mfe structure in ensemble 0.794074;
>TCV_H5
GGGUAACCACUAAAAUCCCGAAAGGGUGGGCU_GUGGUGACCUUCC
((((.(((((......(((....))).......))))).))))... (-11.38 = -11.54 +   0.16)
 free energy of ensemble = -11.87 kcal/mol
 frequency of mfe structure in ensemble 0.85323;
>Rota_CRE
GGAAUUUAAUUCGCUAUCGAUUUGAGAAUGAUGAUGACGAAGCAAGAAUAGAAAGCGCUUAUGUGACC
...((.(((..((((.((.((((.....((.......))......)))).)).)))).))).)).... (  1.78 =   2.35 +  -0.56)
 free energy of ensemble =   0.02 kcal/mol
 frequency of mfe structure in ensemble 0.814643;
>TCV_Pr
AUAGCCUCCCUCCUCGCGCGGGGGGGGGGCCUGC
...(((((((((((.....))))))))))).... (-13.26 = -13.70 +   0.44)
 free energy of ensemble = -13.48 kcal/mol
 frequency of mfe structure in ensemble 0.916621;
>RydC
CUUCCGAUGUAGACCCGU_AUUCUUCGCCUGUACCACGGGUC_GGUUUUAGUACAGGCGUUUUCUU
.........................(((((((((................)))))))))....... ( -8.42 =  -7.18 +  -1.24)
 free energy of ensemble =  -9.79 kcal/mol
 frequency of mfe structure in ensemble 0.641027;
>Thr_leader
ACAUC_______AGCAUUACCACCA___CCAUUACCACCAC___CACCAUUACCACA___GGUAACGGUG_CGGGCUGACGCGUA_CAGGAAAC_ACAGA_AAAAAGCCCGCA_CCUG_A__CAG_UGCGGGCUUUUUUUUU
..............................................((..................)).(.((......)))................((.((((((((((((.(.........).)))))))))))))).. (-18.85 = -17.90 +  -0.95)
 free energy of ensemble = -20.05 kcal/mol
 frequency of mfe structure in ensemble 0.924786;
>Corona_FSE
GGGUUCGGGGUACCAGU___GAAGCUCGUCUAGUACCCUG___UGCUAAUGGCUCUGAUACUGAUGU_UGUAUAAAGGGC_UUUUGAUAU
......((((((.(((.............))).))))))................................................... ( -3.70 =  -1.67 +  -2.03)
 free energy of ensemble =  -4.34 kcal/mol
 frequency of mfe structure in ensemble 0.955724;
>snosnR64
UUUAAAUGAUGAGGAACCAGAUAGGGACAACAGAU__U_____UUUUAAGUGACGAGGAAAGUCU_UUU_AAA_GCCCAGUUUUUAGUAGAGCUU_GGGCGCCUU_ACUGAUU
................((.....)).............................(((((...))).))......((((((((((....))))))..))))............. ( -3.62 =  -3.38 +  -0.24)
 free energy of ensemble =  -5.87 kcal/mol
 frequency of mfe structure in ensemble 0.694505;
>Tombus_IRE
GGUUUGUGAGAAGGUUGGGGUUGCCCACCGAUUUGGGUAUGAUGGGUUUCUGUCAUACUACAGCGGUGCGAAGCUCCGUACUUACACGCGAGCU
...((.((.((((..((.(((..(.(.(((........(((((........))))).......))).).)..))).))..))).).)).))... ( -4.48 =  -2.35 +  -2.13)
 free energy of ensemble =  -6.92 kcal/mol
 frequency of mfe structure in ensemble 0.841789;
>Leu_leader
CUGGAGCUGA__AUUA_AUGA___CUCAUACCGUCCGCUAAAC__G_CUACUACUACUAAACGCAUCUUUUUUGCGCGGUAGGCUGGUGGACGGAAUUCA__ACA_UUAAUUCAGCCCACACGAAAAA__AAAACCCGCGC__CAUUGCGCGGGUUUUUUU
.....(((((...(((.(((..........(((((((((..............(((((...((((.......)))).)))))...))))))))).........)).)))).)))))..............(((((((((((......)))))))))))... (-33.44 = -31.42 +  -2.02)
 free energy of ensemble = -34.61 kcal/mol
 frequency of mfe structure in ensemble 0.72866;
>Trp_leader
CUCGGUUGGUGG_CGCACUUCCCCAAU__CGGGCGGUGUAA_UCACGCAU_______________AUCUGUAAUCAG__AAAACAGAUA____CC__AAGCCCGCUAAU_UAAGCGGGCUUUUUUAU
......((.....))((((.(((.......))).))))............................................................(((((((........)))))))....... (-11.83 =  -9.65 +  -2.19)
 free energy of ensemble = -12.31 kcal/mol
 frequency of mfe structure in ensemble 0.965409;
>His_leader
CCAUCACCAC_CAUCAUCCUGA_CUAG_UCUUUCAGGC__GAUGU_____GUGC_U____GGAAGACAUUAA____GAUCUUCCAG______________UGG_UGCAAGAACGCAUU__AAA___AAACCCUCGGAAGAUC___AUCUUCCGAGGGUUUUUUUUU
..................................(.........)........(.(....((((((............))))))))........................................(((((((((((((........)))))))))))))...... (-23.98 = -20.58 +  -3.40)
 free energy of ensemble = -25.62 kcal/mol
 frequency of mfe structure in ensemble 0.922355;
>ylbH
AUAAAAAAA_CCCAGC___AAA____GCAGGG_______________UCCUUCU__UCCUA_AAUUCA_AAGGA_GAAGGCAAAGGGAGAGGAGAAACCGGAGGAAGAACUUAUGGGGAAACGUAAGUCUUCUCCGCGG
..........(((((((((....)))))))))................(((((...((((((......)))))).))))).....((((((((....((((((......))).)))...........)))))))).... (-36.06 = -30.07 +  -6.00)
 free energy of ensemble = -37.50 kcal/mol
 frequency of mfe structure in ensemble 0.458673;
>serC
CGGUGGGACACCCCUC_CCCAACGAG_GGGCGA_CUAUCUGGAAGGAUAGCAUAA
..........((((((.......))).))).....(((((....)))))...... ( -5.16 =  -3.63 +  -1.53)
 free energy of ensemble =  -5.36 kcal/mol
 frequency of mfe structure in ensemble 0.995448;
>speF
UGCCGGCUGUCCAAAAGCCGGGGUA___ACUGAAGAGGCACA_CCUUCAUUGCCUGAAGUGCGGAAGGG__AUUCUCUCAAAUCCAAGCAAAACAGCACAGAAAGUAAAGCAACGCCGGUUUUCGCGCCGUUUUCGCGCCGCA_ACAGUGUUCCUGUCU__
((((((((.......)))))))).............((((..........))))........(((..((.........))..)))......................(((((.....)))))....................................... (-12.47 = -11.67 +  -0.80)
 free energy of ensemble = -16.06 kcal/mol
 frequency of mfe structure in ensemble 0.378604;
>suhB
UGCCGCUGCCCUUCUU__GGGCGUUUC__CUCCCU___AGACUUC____GGGCCG_CUCU__UCUA______GG_G_C_GGCCCUUUUU_UUUGUCCGGC
.................................................((((((.(((.............)).).).)))))................ (-11.89 =  -8.29 +  -3.60)
 free energy of ensemble = -11.76 kcal/mol
 frequency of mfe structure in ensemble 1.00234;
>ybhL
CAGGCAUGCUGGAGCCCCG_CAGCGGCGCCCGGG__C______________AG_U__GC___CCCGACACCGUA_CU_C_A_CGGAGCUUAA
(((.....))).(((((((...((((.(..((((((........................)))))).).)))).........)))))))... (-18.52 = -18.23 +  -0.29)
 free energy of ensemble = -19.62 kcal/mol
 frequency of mfe structure in ensemble 0.744231;
>SAM_alpha
GACCUAUCCCGUGGUG_AUUUGACC_GGCCGGCUUGCA_GCCACGUUAAACAAGU_CGCUAAAG_AGGCCGGG_GACAAAGUGCA
.........((((((........................))))))........................................ (  0.52 =   0.87 +  -0.35)
 free energy of ensemble =   0.15 kcal/mol
 frequency of mfe structure in ensemble 0.98471;
>PreQ1
AUAGGAGUGGUUCGUAA__ACC__UCCCACU_____________________AUAAAAAACUAAGGAAAA
.....(((((................)))))....................................... (  1.59 =   2.70 +  -1.11)
 free energy of ensemble =   1.53 kcal/mol
 frequency of mfe structure in ensemble 0.997479;
>Prion_pknot
CCAUGG__UGG___UGG___CUGGGG___ACAGCCCCAUGG___UGGUGGCUGG
....................((((((.......))))).).............. (  0.60 =   0.67 +  -0.07)
 free energy of ensemble =  -0.52 kcal/mol
 frequency of mfe structure in ensemble 0.987734;
>Flavivirus_DB
_GGGGGCC__CAA__GCCAUG_UGAAGCUG___UAGG_CUUGG_UGG_AA_GGACUAGAGGUUAGAGGAGACCCCCCCCAAAAA
.(((((((.......((((((.................))))).)......))......((((......)))))))))...... (-14.08 = -10.71 +  -3.36)
 free energy of ensemble = -14.66 kcal/mol
 frequency of mfe structure in ensemble 0.991492;
>snoMe28S-U3344
AUC_CUUUAUGAUGACUACUUUUGAAAUUCUUGAUAGGAAGAGUAUGAAACAUAAUGAGUACUAAAAA__CCAAGCUGA_____AUUGAC
..........................((((((......)))))).............................................. (  4.53 =   4.53 +   0.00)
 free energy of ensemble =   3.64 kcal/mol
 frequency of mfe structure in ensemble 0.834631;
>snoMe28S-G3255
AUUU_UAUGAUGAUUUUAA______AUUUUCUGACAUCUCUAAUGAACCGUUGUGAUUCAAAUUAUUU_UAAUAUAAUUAACUGAUCAU
......................................................................................... (  6.78 =   6.78 +   0.00)
 free energy of ensemble =   5.92 kcal/mol
 frequency of mfe structure in ensemble 0.870081;
>snoMe28S-Gm1083
UUUUA__UC_UGAUGAGCAUU_AACUUUCGCCCCUAUCUGAAAU______UGAAACUUCUCAUGUUGAAUGCGAGAUUGGUCUUACUGAAAAGAACUC
...........(.((((.(((.((.((((((........(((..............)))...........))))))))))))))))............ (  2.58 =   1.98 +   0.60)
 free energy of ensemble =   0.18 kcal/mol
 frequency of mfe structure in ensemble 0.701785;
>snoMe28S-Am2589
UAGCAAAUGAUGAUAAACU_CACACUGAAAGGUGGUCUUGAUCUAUUUUUGAACGAUUC_UAU_GUUUUCCAAGGGAUGUUCGCAUUUGCGAGGCAUUUGUCUGAUGCAAUU
..(((.........................((((...((..((.......))..))....))).)................(((....)))((((....))))..))).... ( -4.77 =  -1.35 +  -3.42)
 free energy of ensemble =  -5.60 kcal/mol
 frequency of mfe structure in ensemble 0.91966;
>snoMe28S-Cm2645
AUUUUUAUGAUGAAAACGUUAGAUAGGGACAUCUGAUGUCUAUGACUGAUUUAUC____U____UGAUAGUAGA_UCUGA_UUUU
........((((..........(((((...........)))))........)))).............................. (  5.20 =   5.36 +  -0.16)
 free energy of ensemble =   4.06 kcal/mol
 frequency of mfe structure in ensemble 0.911921;
>snoMe28S-Gm3113
AUU_UUU__UGUGAUGAUAUAGGAAUUUUACCUUGGGACACCUAUGAA__AUGC_CU_UGAUUAGUGUAAA__UUUUAUU_AUCUGAUAAAA
..................................((....)).................................................. (  6.38 =   6.38 +   0.00)
 free energy of ensemble =   5.36 kcal/mol
 frequency of mfe structure in ensemble 0.895292;
>snoMe18S-Um1356
AU_UCCUU__A_AAUGAUGACAACUUCAUACCC__AACUCAGAGAA_AUUAUGUUGAAAUC___UUUUUAACAUGCAUCACCAUCUGAAUAA_____AAUA
..................................................................................................... (  6.82 =   6.82 +   0.00)
 free energy of ensemble =   6.14 kcal/mol
 frequency of mfe structure in ensemble 0.948702;
>snoMe18S-Gm1358
UAUUUCAAA_____UGAUGAUA_U_UUCCAUGCACCACUCUGAAGCUUUUAUUAGCAUCGUGCAGAUUAUGGAU_UUCUGAA_AAUU
..........................(((((((((........................)))).....))))).............. (  1.42 =   1.55 +  -0.13)
 free energy of ensemble =   0.62 kcal/mol
 frequency of mfe structure in ensemble 0.897128;
>snoMe28S-Am982
AUUUCGUGAUGA_AUGAAACUU___ACACCAUCUUUCGACUGA_AAAACAUUUUGAUGCUAUACAAGUUUUCA__CUGAAUUUUAAU
.......((((..................))))...................................................... (  6.09 =   6.09 +   0.00)
 free energy of ensemble =   5.50 kcal/mol
 frequency of mfe structure in ensemble 0.929529;
>snoMe28S-Cm3227
UUUUUCCUGAUGAUAAGUUCAAUCUGAACAAAGUGCUGUUGAUUCACAACUUAAAAUUAAACCAAAAGGAUUCUGAAA______AAAU
................(((((...)))))........((((.....))))...........((....))................... (  2.30 =   2.57 +  -0.27)
 free energy of ensemble =   0.70 kcal/mol
 frequency of mfe structure in ensemble 0.818684;
>snoMe28S-Am2634
UAUAUU_____UUUAUC_UGAUGAUAUUU_U_GAGUAGGAAUCUCAUUGAGCUUCAGUCAUUCGUUGCUAUGAAAUCAAUUUUA_UCUCUCACUG_AUAAAAUUAUU
........................................................................................................... (  6.90 =   6.90 +   0.00)
 free energy of ensemble =   6.56 kcal/mol
 frequency of mfe structure in ensemble 0.969854;
>snoCD11
UUUAUUCUU___AUGAUGAAUGA_UU_U_AG_CAGAAGAGUUC_UUGAAGACUAUAUUCAUCACCCAAGACUGA___AAUACAUU
................................(((..........((((.......))))..........)))............ (  5.81 =   5.90 +  -0.09)
 free energy of ensemble =   4.73 kcal/mol
 frequency of mfe structure in ensemble 0.934805;
>snoMe28S-Cm788
AUAAA__CAAUGAUGUUAUUUUACAUAUGUUAGACUAAUGAAAUGAUUUGAUUGUAAAUUAGUAACUGAGAAUGU
(....................)(((....((((((((((..(((......)))....))))))..))))...))) (  2.68 =   1.48 +   1.20)
 free energy of ensemble =   0.37 kcal/mol
 frequency of mfe structure in ensemble 0.472011;
>snopsi18S-1854
UCAUUAUCCGUCCAAAACUAAAACUGCAGCGUUG__A_UCCCCA__________CAGCGUUGUGGUAUUC_AAUUGGACCACAAUAAACCCCAUGAUUAACUAUUCCUCUUAAGGGCAUGGGCUCAAAAAUGCAA_CCUUAAUAAAGU_CAUAAAUCAACAACAACAACUA
.........(((((........((((((((((((....................))))))))))))........)))))...............((........))...((((((((((..........))))...))))))............................. (-20.65 = -17.87 +  -2.79)
 free energy of ensemble = -21.93 kcal/mol
 frequency of mfe structure in ensemble 0.878433;
>snopsi28S-2876
CCUGUG_GCCAGCAGCAAUGGCUUGUGGUUCGA__UU__________AG_AG____ACUGCUUGCUUAUAACGCUUGGCCAGAACAAAAAUCUAUCU__UAUCCGUAGCGUCACAAUGUGUAAUAUA_GCCGACAUUUGGCGUAUGAACUGAAGAGACAUUUCA
....((.((((((......((...((((((.....................)....)))))...))......)).)))))).............(((......((((.(((((.(((((.............))))))))))))))......)))......... (-18.01 = -17.06 +  -0.95)
 free energy of ensemble = -20.34 kcal/mol
 frequency of mfe structure in ensemble 0.623972;
>snopsi28S-1192
AAUAGGUCCAAUCUAAUUCUGCAUCAUG______GUUUAUUUAUGUAGUCUCGCUUUUGGACCAGAUCAAUCCCCA__UCUUUUAUUAUCCUUGUGCU_UGUGAC__AAUACUCAGUUCAAUGCACACGAGAAACGUAAAAGAACACUA
....(((((((.......(((((....................)))))........)))))))...............((.(((((..(((.((((((.((.(((..........)))))).))))).).))...))))).))...... (-17.57 = -15.71 +  -1.86)
 free energy of ensemble = -18.64 kcal/mol
 frequency of mfe structure in ensemble 0.89018;
>snopsi18S-1377
CCGUUCUUGUGUUAUUCGCUGGAUGUUAUUUCCAAAG_CCAGCGAUUGUCAAACAGAACGCAAAUU______AA_____UGCC___ACUAAUCACUCCACAAUGUUGAGCCGACUUU___CCAGGGCUACUGCAUUACU_AACG__GCUCGCCACAUUC
.((((((.((.....(((((((................))))))).......))))))))........................................(((((.(((((.............)))).).))))).......(.......)....... (-11.78 = -10.20 +  -1.58)
 free energy of ensemble = -14.51 kcal/mol
 frequency of mfe structure in ensemble 0.744292;
>snopsi28S-3327
UUGUGGGCUUCGUCGAAGACCGAUUUACGCUUA__UU______GCAAUGUGCCU_AUUGGUUCAAAA___CG_AAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU_UCG_GCA_U_UCCA_CAGCCGUUUCAGUAACUUUUACGUGCAAUUACAAUU
....(((((.((.....((((((...((((..................))))....))))))........))..)))))..........(((.((((..(((..((((...((.((...........))))..))))..)))....)))))))........ (-25.56 = -22.59 +  -2.97)
 free energy of ensemble = -26.23 kcal/mol
 frequency of mfe structure in ensemble 0.924799;
>snopsi28S-3316
AGCACCUAAA_AGCGUUUUCUUGCC_AGCCUGUU____AAAUGCUCUUGAAAAUCGUAGAU_GUGUGCCAGAGC_A___A___UCC___UUACAGUUGC_AAGUGAUUU__GAGUU__C_CUUUAU_____AA_____CUCA_AAUCCAUUU_ACA_UUGUGAACAUUU
.((((.......((((((((..(...(((.............))))..))))).))).......))))......................((.(((......((((((....((((...............)).....))...))).))).....).)).))....... ( -4.64 =  -0.95 +  -3.69)
 free energy of ensemble =  -6.46 kcal/mol
 frequency of mfe structure in ensemble 0.914752;
>HepE_CRE
GAGUCAGUAAAACCUGUGCUUGACCUGACAAAUUCAAUCAUGUAUCGGGUGGAAUGAAUAACAUGU_CUUUUGCUGCGCCCAUGGGUUCGCCACCAUGCGCCCUCGGCCUAUUUUGUUGCUGCUCCUCAUGUUUCUGCCUAUGCUGCCCGC
(....................................................(((.....)))................(((((........))))))((....((........((....((.......))....))........)).)) ( -0.92 =  -0.30 +  -0.62)
 free energy of ensemble =  -5.11 kcal/mol
 frequency of mfe structure in ensemble 0.862737;
