{
  "modified_base": {
    "name": "N1-Methylpseudouridine (m1Ψ)",
    "sources": [
      {
        "authors": "Nivedita Dutta, Joanna Sarzynska, Indrajit Deb, and Ansuman Lahiri ",
        "title": "Predicting nearest neighbor free energies of modified RNA with LIE: Results for pseudouridine and N1-methylpseudouridine within RNA duplexes",
        "journal": "Physical Chemistry Chemical Physics 26:992-999",
        "year": 2024,
        "doi": "10.1039/D3CP02442C"
      }
    ],
    "unmodified": "U",
    "pairing_partners": [
      "A", "G"
    ],
    "one_letter_code": "1",
    "fallback": "U",
    "stacking_energies": {
      "G1CA": -3.086,
      "1CAG": -2.405,
      "C1GA": -2.616,
      "1GAC": -2.798,
      "A1UA": -1.870,
      "1UAA": -1.326,
      "U1AA": -1.538,
      "1AAU": -1.864,
      "G1CG": -3.255,
      "1CGG": -2.123
    },
    "mismatch_energies": {
      "G1CU": -2.421,
      "GUC1": -1.757,
      "G1CC": -2.491,
      "GCC1": -1.824
    },
    "duplexes": {
      "UCAG1CAGUAGUCAGUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -13.471
      },
      "UCAC1GAGUAGUGACUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -13.39
      },
      "UCAA1UAGUAGUUAAUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -9.25
      },
      "UCAU1AAGUAGUAAUUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -9.22
      },
      "UCAG1CAGUAGUCGGUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -13.36
      },
      "UCAG1CAGUAGUCUGUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -12.16
      },
      "UCAG1CAGUAGUCCGUCA": {
        "length1": 9,
        "length2": 9,
        "dG37_p": -12.29
      }
    }
  }
}
