Shortcuts
For more convenience, SeqAn defines some shortcuts for often used data types.
Iterators
| Iterator for CharString. | |
| Iterator for Dna5String. | |
| Iterator for DnaString. | |
| Iterator for IupacString. | |
| Iterator for Peptide. | |
| Iterator for UnicodeString. |
Modifier
| Modifier for the complement of a Dna5String. | |
| Modifier for the reverse of a Dna5String. | |
| Modifier for the reverse complement of a Dna5String. | |
| Modifier for the complement of a DnaString. | |
| Modifier for the reverse of a DnaString. | |
| Modifier for the reverse complement of a DnaString. | |
| Modifier specialization type for the complement of Dna alphabet sequences. | |
| Modifier specialization type for the complement of Dna5 alphabet sequences. |
Scoring
| Blosum30 scoring matrix. | |
| Blosum62 scoring matrix. | |
| Blosum80 scoring matrix. |
Strings
| A string of | |
| A string of Dna5. | |
| A string of Dna. | |
| A string of Iupac. | |
| A string of AminoAcid. | |
| A string of |
scoring
| Edit distance scoring scheme. | |
| Simple scoring scheme. |
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