A B C D E F G I L M N O P Q R S T U V W misc
| ACF | Autocorrelation Function | 
| ACF.gls | Autocorrelation Function for gls Residuals | 
| ACF.lme | Autocorrelation Function for lme Residuals | 
| Alfalfa | Split-Plot Experiment on Varieties of Alfalfa | 
| allCoef | Extract Coefficients from a Set of Objects | 
| anova.gls | Compare Likelihoods of Fitted Objects | 
| anova.lme | Compare Likelihoods of Fitted Objects | 
| as.data.frame.groupedData | Construct a groupedData Object | 
| as.matrix.corStruct | Matrix of a corStruct Object | 
| as.matrix.pdMat | Matrix of a pdMat Object | 
| as.matrix.reStruct | Matrices of an reStruct Object | 
| asOneFormula | Combine Formulas of a Set of Objects | 
| Assay | Bioassay on Cell Culture Plate | 
| asTable | Convert groupedData to a matrix | 
| asTable.groupedData | Convert groupedData to a matrix | 
| augPred | Augmented Predictions | 
| augPred.gls | Augmented Predictions | 
| augPred.lme | Augmented Predictions | 
| augPred.lmList | Augmented Predictions | 
| balancedGrouped | Create a groupedData object from a matrix | 
| bdf | Language scores | 
| BodyWeight | Rat weight over time for different diets | 
| Cefamandole | Pharmacokinetics of Cefamandole | 
| coef.corAR1 | Coefficients of a corStruct Object | 
| coef.corARMA | ARMA(p,q) Correlation Structure | 
| coef.corARMAd | Coefficients of a corStruct Object | 
| coef.corCAR1 | Coefficients of a corStruct Object | 
| coef.corCompSymm | Coefficients of a corStruct Object | 
| coef.corLin | Coefficients of a corStruct Object | 
| coef.corNatural | Coefficients of a corStruct Object | 
| coef.corSpatial | Coefficients of a corStruct Object | 
| coef.corSpher | Coefficients of a corStruct Object | 
| coef.corStruct | Coefficients of a corStruct Object | 
| coef.corSymm | Coefficients of a corStruct Object | 
| coef.gnls | Extract gnls Coefficients | 
| coef.lme | Extract lme Coefficients | 
| coef.lmList | Extract lmList Coefficients | 
| coef.modelStruct | Extract modelStruct Object Coefficients | 
| coef.pdBlocked | pdMat Object Coefficients | 
| coef.pdCompSymm | pdMat Object Coefficients | 
| coef.pdDiag | pdMat Object Coefficients | 
| coef.pdIdent | pdMat Object Coefficients | 
| coef.pdMat | pdMat Object Coefficients | 
| coef.pdNatural | pdMat Object Coefficients | 
| coef.pdSymm | pdMat Object Coefficients | 
| coef.reStruct | reStruct Object Coefficients | 
| coef.summary.nlsList | Coefficients of a corStruct Object | 
| coef.varComb | varFunc Object Coefficients | 
| coef.varConstPower | varFunc Object Coefficients | 
| coef.varConstProp | varFunc Object Coefficients | 
| coef.varExp | varFunc Object Coefficients | 
| coef.varFixed | varFunc Object Coefficients | 
| coef.varFunc | varFunc Object Coefficients | 
| coef.varIdent | varFunc Object Coefficients | 
| coef.varPower | varFunc Object Coefficients | 
| coef<- | Assign Values to Coefficients | 
| coef<-.corAR1 | Coefficients of a corStruct Object | 
| coef<-.corARMA | Coefficients of a corStruct Object | 
| coef<-.corCAR1 | Coefficients of a corStruct Object | 
| coef<-.corCompSymm | Coefficients of a corStruct Object | 
| coef<-.corLin | Coefficients of a corStruct Object | 
| coef<-.corNatural | Coefficients of a corStruct Object | 
| coef<-.corSpatial | Coefficients of a corStruct Object | 
| coef<-.corSpher | Coefficients of a corStruct Object | 
| coef<-.corStruct | Coefficients of a corStruct Object | 
| coef<-.corSymm | Coefficients of a corStruct Object | 
| coef<-.modelStruct | Extract modelStruct Object Coefficients | 
| coef<-.pdBlocked | pdMat Object Coefficients | 
| coef<-.pdMat | pdMat Object Coefficients | 
| coef<-.reStruct | reStruct Object Coefficients | 
| coef<-.varComb | varFunc Object Coefficients | 
| coef<-.varConstPower | varFunc Object Coefficients | 
| coef<-.varConstProp | varFunc Object Coefficients | 
| coef<-.varExp | varFunc Object Coefficients | 
| coef<-.varFixed | varFunc Object Coefficients | 
| coef<-.varIdent | varFunc Object Coefficients | 
| coef<-.varPower | varFunc Object Coefficients | 
| coefficients<- | Assign Values to Coefficients | 
| collapse | Collapse According to Groups | 
| collapse.groupedData | Collapse a groupedData Object | 
| compareFits | Compare Fitted Objects | 
| comparePred | Compare Predictions | 
| comparePred.gls | Compare Predictions | 
| comparePred.lme | Compare Predictions | 
| comparePred.lmList | Compare Predictions | 
| corAR1 | AR(1) Correlation Structure | 
| corARMA | ARMA(p,q) Correlation Structure | 
| corCAR1 | Continuous AR(1) Correlation Structure | 
| corClasses | Correlation Structure Classes | 
| corCompSymm | Compound Symmetry Correlation Structure | 
| corExp | Exponential Correlation Structure | 
| corFactor | Factor of a Correlation Matrix | 
| corFactor.corAR1 | Factor of a corStruct Object Matrix | 
| corFactor.corARMA | Factor of a corStruct Object Matrix | 
| corFactor.corCAR1 | Factor of a corStruct Object Matrix | 
| corFactor.corCompSymm | Factor of a corStruct Object Matrix | 
| corFactor.corNatural | Factor of a corStruct Object Matrix | 
| corFactor.corSpatial | Factor of a corStruct Object Matrix | 
| corFactor.corStruct | Factor of a corStruct Object Matrix | 
| corFactor.corSymm | Factor of a corStruct Object Matrix | 
| corGaus | Gaussian Correlation Structure | 
| corLin | Linear Correlation Structure | 
| corMatrix | Extract Correlation Matrix | 
| corMatrix.corAR1 | Matrix of a corStruct Object | 
| corMatrix.corARMA | Matrix of a corStruct Object | 
| corMatrix.corCAR1 | Matrix of a corStruct Object | 
| corMatrix.corCompSymm | Matrix of a corStruct Object | 
| corMatrix.corNatural | Matrix of a corStruct Object | 
| corMatrix.corSpatial | Matrix of a corStruct Object | 
| corMatrix.corStruct | Matrix of a corStruct Object | 
| corMatrix.corSymm | Matrix of a corStruct Object | 
| corMatrix.pdBlocked | Extract Correlation Matrix from a pdMat Object | 
| corMatrix.pdCompSymm | Extract Correlation Matrix from a pdMat Object | 
| corMatrix.pdDiag | Extract Correlation Matrix from a pdMat Object | 
| corMatrix.pdIdent | Extract Correlation Matrix from a pdMat Object | 
| corMatrix.pdMat | Extract Correlation Matrix from a pdMat Object | 
| corMatrix.pdSymm | Extract Correlation Matrix from a pdMat Object | 
| corMatrix.reStruct | Extract Correlation Matrix from Components of an reStruct Object | 
| corNatural | General correlation in natural parameterization | 
| corRatio | Rational Quadratic Correlation Structure | 
| corSpatial | Spatial Correlation Structure | 
| corSpher | Spherical Correlation Structure | 
| corStruct | Correlation Structure Classes | 
| corSymm | General Correlation Structure | 
| covariate<- | Assign Covariate Values | 
| covariate<-.varFunc | Assign varFunc Covariate | 
| Dialyzer | High-Flux Hemodialyzer | 
| Dim | Extract Dimensions from an Object | 
| Dim.corSpatial | Dimensions of a corSpatial Object | 
| Dim.corStruct | Dimensions of a corStruct Object | 
| Dim.default | Extract Dimensions from an Object | 
| Dim.pdCompSymm | Dimensions of a pdMat Object | 
| Dim.pdDiag | Dimensions of a pdMat Object | 
| Dim.pdIdent | Dimensions of a pdMat Object | 
| Dim.pdMat | Dimensions of a pdMat Object | 
| Dim.pdNatural | Dimensions of a pdMat Object | 
| Dim.pdSymm | Dimensions of a pdMat Object | 
| Earthquake | Earthquake Intensity | 
| ergoStool | Ergometrics experiment with stool types | 
| Fatigue | Cracks caused by metal fatigue | 
| fdHess | Finite difference Hessian | 
| fitted.glsStruct | Calculate glsStruct Fitted Values | 
| fitted.gnlsStruct | Calculate gnlsStruct Fitted Values | 
| fitted.lme | Extract lme Fitted Values | 
| fitted.lmeStruct | Calculate lmeStruct Fitted Values | 
| fitted.lmList | Extract lmList Fitted Values | 
| fitted.nlmeStruct | Calculate nlmeStruct Fitted Values | 
| fixed.effects | Extract Fixed Effects | 
| fixed.effects.lmList | Extract lmList Fixed Effects | 
| fixef | Extract Fixed Effects | 
| fixef.lmList | Extract lmList Fixed Effects | 
| formula.pdBlocked | Extract pdBlocked Formula | 
| formula.pdMat | Extract pdMat Formula | 
| formula.reStruct | Extract reStruct Object Formula | 
| gapply | Apply a Function by Groups | 
| Gasoline | Refinery yield of gasoline | 
| getCovariate | Extract Covariate from an Object | 
| getCovariate.corSpatial | Extract corStruct Object Covariate | 
| getCovariate.corStruct | Extract corStruct Object Covariate | 
| getCovariate.data.frame | Extract Data Frame Covariate | 
| getCovariate.varFunc | Extract varFunc Covariate | 
| getCovariateFormula | Extract Covariates Formula | 
| getData | Extract Data from an Object | 
| getData.gls | Extract gls Object Data | 
| getData.gnls | Extract gls Object Data | 
| getData.lme | Extract lme Object Data | 
| getData.lmList | Extract lmList Object Data | 
| getData.nlme | Extract lme Object Data | 
| getData.nls | Extract lme Object Data | 
| getGroups | Extract Grouping Factors from an Object | 
| getGroups.corStruct | Extract corStruct Groups | 
| getGroups.data.frame | Extract Groups from a Data Frame | 
| getGroups.gls | Extract gls Object Groups | 
| getGroups.lme | Extract lme Object Groups | 
| getGroups.lmList | Extract lmList Object Groups | 
| getGroups.varFunc | Extract varFunc Groups | 
| getGroupsFormula | Extract Grouping Formula | 
| getGroupsFormula.default | Extract Grouping Formula | 
| getGroupsFormula.gls | Extract Grouping Formula | 
| getGroupsFormula.lme | Extract Grouping Formula | 
| getGroupsFormula.lmList | Extract Grouping Formula | 
| getGroupsFormula.reStruct | Extract Grouping Formula | 
| getResponse | Extract Response Variable from an Object | 
| getResponse.data.frame | Extract Response Variable from an Object | 
| getResponseFormula | Extract Formula Specifying Response Variable | 
| getVarCov | Extract variance-covariance matrix | 
| getVarCov.gls | Extract variance-covariance matrix | 
| getVarCov.lme | Extract variance-covariance matrix | 
| gls | Fit Linear Model Using Generalized Least Squares | 
| glsControl | Control Values for gls Fit | 
| glsObject | Fitted gls Object | 
| glsStruct | Generalized Least Squares Structure | 
| Glucose | Glucose levels over time | 
| Glucose2 | Glucose Levels Following Alcohol Ingestion | 
| gnls | Fit Nonlinear Model Using Generalized Least Squares | 
| gnlsControl | Control Values for gnls Fit | 
| gnlsObject | Fitted gnls Object | 
| gnlsStruct | Generalized Nonlinear Least Squares Structure | 
| groupedData | Construct a groupedData Object | 
| gsummary | Summarize by Groups | 
| Gun | Methods for firing naval guns | 
| IGF | Radioimmunoassay of IGF-I Protein | 
| Initialize | Initialize Object | 
| Initialize.corAR1 | Initialize corStruct Object | 
| Initialize.corARMA | Initialize corStruct Object | 
| Initialize.corCAR1 | Initialize corStruct Object | 
| Initialize.corCompSymm | Initialize corStruct Object | 
| Initialize.corLin | Initialize corStruct Object | 
| Initialize.corNatural | Initialize corStruct Object | 
| Initialize.corSpatial | Initialize corStruct Object | 
| Initialize.corSpher | Initialize corStruct Object | 
| Initialize.corStruct | Initialize corStruct Object | 
| Initialize.corSymm | Initialize corStruct Object | 
| Initialize.glsStruct | Initialize a glsStruct Object | 
| Initialize.gnlsStruct | Generalized Nonlinear Least Squares Structure | 
| Initialize.lmeStruct | Initialize an lmeStruct Object | 
| Initialize.reStruct | Initialize reStruct Object | 
| Initialize.varComb | Initialize varFunc Object | 
| Initialize.varConstPower | Initialize varFunc Object | 
| Initialize.varConstProp | Initialize varFunc Object | 
| Initialize.varExp | Initialize varFunc Object | 
| Initialize.varFixed | Initialize varFunc Object | 
| Initialize.varFunc | Initialize varFunc Object | 
| Initialize.varIdent | Initialize varFunc Object | 
| Initialize.varPower | Initialize varFunc Object | 
| intervals | Confidence Intervals on Coefficients | 
| intervals.gls | Confidence Intervals on gls Parameters | 
| intervals.lme | Confidence Intervals on lme Parameters | 
| intervals.lmList | Confidence Intervals on lmList Coefficients | 
| isBalanced | Check a Design for Balance | 
| isBalanced.groupedData | Check a Design for Balance | 
| isInitialized | Check if Object is Initialized | 
| isInitialized.pdBlocked | Check if Object is Initialized | 
| isInitialized.pdMat | Check if Object is Initialized | 
| LDEsysMat | Generate system matrix for LDEs | 
| lme | Linear Mixed-Effects Models | 
| lme.formula | Linear Mixed-Effects Models | 
| lme.groupedData | LME fit from groupedData Object | 
| lme.lmList | LME fit from lmList Object | 
| lmeControl | Specifying Control Values for lme Fit | 
| lmeObject | Fitted lme Object | 
| lmeStruct | Linear Mixed-Effects Structure | 
| lmList | List of lm Objects with a Common Model | 
| lmList.formula | List of lm Objects with a Common Model | 
| lmList.groupedData | lmList Fit from a groupedData Object | 
| logDet | Extract the Logarithm of the Determinant | 
| logDet.corStruct | Extract corStruct Log-Determinant | 
| logDet.pdBlocked | Extract Log-Determinant from a pdMat Object | 
| logDet.pdCompSymm | Extract Log-Determinant from a pdMat Object | 
| logDet.pdDiag | Extract Log-Determinant from a pdMat Object | 
| logDet.pdIdent | Extract Log-Determinant from a pdMat Object | 
| logDet.pdMat | Extract Log-Determinant from a pdMat Object | 
| logDet.pdNatural | Extract Log-Determinant from a pdMat Object | 
| logDet.pdSymm | Extract Log-Determinant from a pdMat Object | 
| logDet.reStruct | Extract reStruct Log-Determinants | 
| logLik.corStruct | Extract corStruct Log-Likelihood | 
| logLik.gls | Log-Likelihood of an lme Object | 
| logLik.glsStruct | Log-Likelihood of a glsStruct Object | 
| logLik.gnls | Log-Likelihood of a gnls Object | 
| logLik.gnlsStruct | Log-Likelihood of a gnlsStruct Object | 
| logLik.lme | Log-Likelihood of an lme Object | 
| logLik.lmeStruct | Log-Likelihood of an lmeStruct Object | 
| logLik.lmeStructInt | Log-Likelihood of an lmeStruct Object | 
| logLik.lmList | Log-Likelihood of an lmList Object | 
| logLik.reStruct | Calculate reStruct Log-Likelihood | 
| logLik.varComb | Extract varFunc logLik | 
| logLik.varFunc | Extract varFunc logLik | 
| Machines | Productivity Scores for Machines and Workers | 
| MathAchieve | Mathematics achievement scores | 
| MathAchSchool | School demographic data for MathAchieve | 
| matrix<- | Assign Matrix Values | 
| matrix<-.pdBlocked | Assign Matrix to a pdMat or pdBlocked Object | 
| matrix<-.pdMat | Assign Matrix to a pdMat or pdBlocked Object | 
| matrix<-.reStruct | Assign reStruct Matrices | 
| Meat | Tenderness of meat | 
| Milk | Protein content of cows' milk | 
| model.matrix.reStruct | reStruct Model Matrix | 
| Muscle | Contraction of heart muscle sections | 
| Names | Names Associated with an Object | 
| Names.formula | Extract Names from a formula | 
| Names.listForm | Extract Names from a formula | 
| Names.pdBlocked | Names of a pdBlocked Object | 
| Names.pdMat | Names of a pdMat Object | 
| Names.reStruct | Names of an reStruct Object | 
| Names<- | Names Associated with an Object | 
| Names<-.pdBlocked | Names of a pdBlocked Object | 
| Names<-.pdMat | Names of a pdMat Object | 
| Names<-.reStruct | Names of an reStruct Object | 
| needUpdate | Check if Update is Needed | 
| needUpdate.corStruct | Check if a modelStruct Object Needs Updating | 
| needUpdate.default | Check if Update is Needed | 
| needUpdate.modelStruct | Check if a modelStruct Object Needs Updating | 
| needUpdate.reStruct | Check if a modelStruct Object Needs Updating | 
| needUpdate.varComb | Check if Update is Needed | 
| needUpdate.varIdent | Check if Update is Needed | 
| Nitrendipene | Assay of nitrendipene | 
| nlme | Nonlinear Mixed-Effects Models | 
| nlme.formula | Nonlinear Mixed-Effects Models | 
| nlme.nlsList | NLME fit from nlsList Object | 
| nlmeControl | Control Values for nlme Fit | 
| nlmeObject | Fitted nlme Object | 
| nlmeStruct | Nonlinear Mixed-Effects Structure | 
| nlsList | List of nls Objects with a Common Model | 
| nlsList.formula | List of nls Objects with a Common Model | 
| nlsList.selfStart | nlsList Fit from a selfStart Function | 
| Oats | Split-plot Experiment on Varieties of Oats | 
| Orthodont | Growth curve data on an orthdontic measurement | 
| Ovary | Counts of Ovarian Follicles | 
| Oxboys | Heights of Boys in Oxford | 
| Oxide | Variability in Semiconductor Manufacturing | 
| pairs.compareFits | Pairs Plot of compareFits Object | 
| pairs.lme | Pairs Plot of an lme Object | 
| pairs.lmList | Pairs Plot of an lmList Object | 
| PBG | Effect of Phenylbiguanide on Blood Pressure | 
| pdBlocked | Positive-Definite Block Diagonal Matrix | 
| pdClasses | Positive-Definite Matrix Classes | 
| pdCompSymm | Positive-Definite Matrix with Compound Symmetry Structure | 
| pdConstruct | Construct pdMat Objects | 
| pdConstruct.pdBlocked | Construct pdBlocked Objects | 
| pdConstruct.pdCompSymm | Construct pdMat Objects | 
| pdConstruct.pdDiag | Construct pdMat Objects | 
| pdConstruct.pdIdent | Construct pdMat Objects | 
| pdConstruct.pdLogChol | Construct pdMat Objects | 
| pdConstruct.pdMat | Construct pdMat Objects | 
| pdConstruct.pdNatural | Construct pdMat Objects | 
| pdConstruct.pdSymm | Construct pdMat Objects | 
| pdDiag | Diagonal Positive-Definite Matrix | 
| pdFactor | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdBlocked | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdCompSymm | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdDiag | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdIdent | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdLogChol | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdMat | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdNatural | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.pdSymm | Square-Root Factor of a Positive-Definite Matrix | 
| pdFactor.reStruct | Extract Square-Root Factor from Components of an reStruct Object | 
| pdIdent | Multiple of the Identity Positive-Definite Matrix | 
| pdLogChol | General Positive-Definite Matrix | 
| pdMat | Positive-Definite Matrix | 
| pdMatrix | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdBlocked | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdCompSymm | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdDiag | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdIdent | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdMat | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdNatural | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.pdSymm | Extract Matrix or Square-Root Factor from a pdMat Object | 
| pdMatrix.reStruct | Extract Matrix or Square-Root Factor from Components of an reStruct Object | 
| pdNatural | General Positive-Definite Matrix in Natural Parametrization | 
| pdSymm | General Positive-Definite Matrix | 
| Phenobarb | Phenobarbitol Kinetics | 
| phenoModel | Model function for the Phenobarb data | 
| Pixel | X-ray pixel intensities over time | 
| plot.ACF | Plot an ACF Object | 
| plot.augPred | Plot an augPred Object | 
| plot.compareFits | Plot a compareFits Object | 
| plot.gls | Plot a gls Object | 
| plot.intervals.lmList | Plot lmList Confidence Intervals | 
| plot.lme | Plot an lme or nls object | 
| plot.lmList | Plot an lmList Object | 
| plot.nffGroupedData | Plot an nffGroupedData Object | 
| plot.nfnGroupedData | Plot an nfnGroupedData Object | 
| plot.nls | Plot an lme or nls object | 
| plot.nmGroupedData | Plot an nmGroupedData Object | 
| plot.pdMat | Positive-Definite Matrix | 
| plot.ranef.lme | Plot a ranef.lme Object | 
| plot.ranef.lmList | Plot a ranef.lmList Object | 
| plot.simulate.lme | Simulate Results from 'lme' Models | 
| plot.Variogram | Plot a Variogram Object | 
| pooledSD | Extract Pooled Standard Deviation | 
| predict.gls | Predictions from a gls Object | 
| predict.gnls | Predictions from a gnls Object | 
| predict.lme | Predictions from an lme Object | 
| predict.lmList | Predictions from an lmList Object | 
| predict.nlme | Predictions from an nlme Object | 
| print.anova.lme | Compare Likelihoods of Fitted Objects | 
| print.compareFits | Compare Fitted Objects | 
| print.corNatural | General correlation in natural parameterization | 
| print.intervals.gls | Confidence Intervals on gls Parameters | 
| print.intervals.lme | Confidence Intervals on lme Parameters | 
| print.intervals.lmList | Confidence Intervals on lmList Coefficients | 
| print.lmList | List of lm Objects with a Common Model | 
| print.ranef.lme | Extract lme Random Effects | 
| print.reStruct | Random Effects Structure | 
| print.simulate.lme | Simulate Results from 'lme' Models | 
| print.summary.lme | Summarize an lme Object | 
| print.summary.pdMat | Print a summary.pdMat Object | 
| print.varComb | Print a varFunc Object | 
| print.VarCorr.lme | Extract variance and correlation components | 
| print.VarCov | Extract variance-covariance matrix | 
| print.varFunc | Print a varFunc Object | 
| qqnorm.gls | Normal Plot of Residuals from a gls Object | 
| qqnorm.lm | Normal Plot of Residuals or Random Effects from an lme Object | 
| qqnorm.lme | Normal Plot of Residuals or Random Effects from an lme Object | 
| qqnorm.lmList | Normal Plot of Residuals or Random Effects from an lme Object | 
| qqnorm.nls | Normal Plot of Residuals or Random Effects from an lme Object | 
| Quinidine | Quinidine Kinetics | 
| quinModel | Model function for the Quinidine data | 
| Rail | Evaluation of Stress in Railway Rails | 
| random.effects | Extract Random Effects | 
| random.effects.lme | Extract lme Random Effects | 
| random.effects.lmList | Extract lmList Random Effects | 
| ranef | Extract Random Effects | 
| ranef.lme | Extract lme Random Effects | 
| ranef.lmList | Extract lmList Random Effects | 
| RatPupWeight | The weight of rat pups | 
| recalc | Recalculate Condensed Linear Model Object | 
| recalc.corAR1 | Recalculate for corStruct Object | 
| recalc.corARMA | Recalculate for corStruct Object | 
| recalc.corCAR1 | Recalculate for corStruct Object | 
| recalc.corCompSymm | Recalculate for corStruct Object | 
| recalc.corNatural | Recalculate for corStruct Object | 
| recalc.corSpatial | Recalculate for corStruct Object | 
| recalc.corStruct | Recalculate for corStruct Object | 
| recalc.corSymm | Recalculate for corStruct Object | 
| recalc.modelStruct | Recalculate for a modelStruct Object | 
| recalc.reStruct | Recalculate for an reStruct Object | 
| recalc.varFunc | Recalculate for varFunc Object | 
| recalc.varIdent | Recalculate for varFunc Object | 
| Relaxin | Assay for Relaxin | 
| Remifentanil | Pharmacokinetics of Remifentanil | 
| residuals.gls | Extract gls Residuals | 
| residuals.glsStruct | Calculate glsStruct Residuals | 
| residuals.gnls | Extract gls Residuals | 
| residuals.gnlsStruct | Calculate gnlsStruct Residuals | 
| residuals.lme | Extract lme Residuals | 
| residuals.lmeStruct | Calculate lmeStruct Residuals | 
| residuals.lmList | Extract lmList Residuals | 
| residuals.nlmeStruct | Calculate nlmeStruct Residuals | 
| reStruct | Random Effects Structure | 
| simulate.lme | Simulate Results from 'lme' Models | 
| solve.pdBlocked | Calculate Inverse of a Positive-Definite Matrix | 
| solve.pdDiag | Calculate Inverse of a Positive-Definite Matrix | 
| solve.pdIdent | Calculate Inverse of a Positive-Definite Matrix | 
| solve.pdLogChol | Calculate Inverse of a Positive-Definite Matrix | 
| solve.pdMat | Calculate Inverse of a Positive-Definite Matrix | 
| solve.pdNatural | Calculate Inverse of a Positive-Definite Matrix | 
| solve.pdSymm | Calculate Inverse of a Positive-Definite Matrix | 
| solve.reStruct | Apply Solve to an reStruct Object | 
| Soybean | Growth of soybean plants | 
| splitFormula | Split a Formula | 
| Spruce | Growth of Spruce Trees | 
| summary.corAR1 | Summarize a corStruct Object | 
| summary.corARMA | Summarize a corStruct Object | 
| summary.corCAR1 | Summarize a corStruct Object | 
| summary.corCompSymm | Summarize a corStruct Object | 
| summary.corExp | Summarize a corStruct Object | 
| summary.corGaus | Summarize a corStruct Object | 
| summary.corLin | Summarize a corStruct Object | 
| summary.corNatural | Summarize a corStruct Object | 
| summary.corRatio | Summarize a corStruct Object | 
| summary.corSpher | Summarize a corStruct Object | 
| summary.corStruct | Summarize a corStruct Object | 
| summary.corSymm | Summarize a corStruct Object | 
| summary.gls | Summarize a Generalized Least Squares 'gls' Object | 
| summary.lme | Summarize an lme Object | 
| summary.lmList | Summarize an lmList Object | 
| summary.modelStruct | Summarize a modelStruct Object | 
| summary.nlsList | Summarize an nlsList Object | 
| summary.pdBlocked | Summarize a pdMat Object | 
| summary.pdCompSymm | Summarize a pdMat Object | 
| summary.pdDiag | Summarize a pdMat Object | 
| summary.pdIdent | Summarize a pdMat Object | 
| summary.pdLogChol | Summarize a pdMat Object | 
| summary.pdMat | Summarize a pdMat Object | 
| summary.pdNatural | Summarize a pdMat Object | 
| summary.pdSymm | Summarize a pdMat Object | 
| summary.reStruct | Summarize a modelStruct Object | 
| summary.varComb | Summarize "varFunc" Object | 
| summary.varConstPower | Summarize "varFunc" Object | 
| summary.varConstProp | Summarize "varFunc" Object | 
| summary.varExp | Summarize "varFunc" Object | 
| summary.varFixed | Summarize "varFunc" Object | 
| summary.varFunc | Summarize "varFunc" Object | 
| summary.varIdent | Summarize "varFunc" Object | 
| summary.varPower | Summarize "varFunc" Object | 
| Tetracycline1 | Pharmacokinetics of tetracycline | 
| Tetracycline2 | Pharmacokinetics of tetracycline | 
| update.corStruct | Update a modelStruct Object | 
| update.gls | Fit Linear Model Using Generalized Least Squares | 
| update.groupedData | Construct a groupedData Object | 
| update.lme | Linear Mixed-Effects Models | 
| update.lmList | List of lm Objects with a Common Model | 
| update.modelStruct | Update a modelStruct Object | 
| update.nlsList | List of nls Objects with a Common Model | 
| update.reStruct | Update a modelStruct Object | 
| update.varComb | Update varFunc Object | 
| update.varConstPower | Update varFunc Object | 
| update.varConstProp | Update varFunc Object | 
| update.varExp | Update varFunc Object | 
| update.varExpon | Update varFunc Object | 
| update.varFunc | Update varFunc Object | 
| update.varPower | Update varFunc Object | 
| varClasses | Variance Function Classes | 
| varComb | Combination of Variance Functions | 
| varConstPower | Constant Plus Power Variance Function | 
| varConstProp | Constant Plus Proportion Variance Function | 
| VarCorr | Extract variance and correlation components | 
| VarCorr.lme | Extract variance and correlation components | 
| VarCorr.pdBlocked | Extract variance and correlation components | 
| VarCorr.pdMat | Extract variance and correlation components | 
| varExp | Exponential Variance Function | 
| varFixed | Fixed Variance Function | 
| varFunc | Variance Function Structure | 
| varIdent | Constant Variance Function | 
| Variogram | Calculate Semi-variogram | 
| Variogram.corExp | Calculate Semi-variogram for a corExp Object | 
| Variogram.corGaus | Calculate Semi-variogram for a corGaus Object | 
| Variogram.corLin | Calculate Semi-variogram for a corLin Object | 
| Variogram.corRatio | Calculate Semi-variogram for a corRatio Object | 
| Variogram.corSpatial | Calculate Semi-variogram for a corSpatial Object | 
| Variogram.corSpher | Calculate Semi-variogram for a corSpher Object | 
| Variogram.default | Calculate Semi-variogram | 
| Variogram.gls | Calculate Semi-variogram for Residuals from a gls Object | 
| Variogram.lme | Calculate Semi-variogram for Residuals from an lme Object | 
| varPower | Power Variance Function | 
| varWeights | Extract Variance Function Weights | 
| varWeights.glsStruct | Variance Weights for glsStruct Object | 
| varWeights.lmeStruct | Variance Weights for lmeStruct Object | 
| varWeights.varComb | Extract Variance Function Weights | 
| varWeights.varFunc | Extract Variance Function Weights | 
| Wafer | Modeling of Analog MOS Circuits | 
| Wheat | Yields by growing conditions | 
| Wheat2 | Wheat Yield Trials | 
| [.groupedData | Construct a groupedData Object | 
| [.pdBlocked | Subscript a pdMat Object | 
| [.pdMat | Subscript a pdMat Object | 
| [.reStruct | Random Effects Structure | 
| [<-.pdMat | Subscript a pdMat Object |